BAC Information

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BAC

Clone NameMSMg01-046M15
Chromosome6 (Build37)
Map Location 68,375,382 - 68,375,934
singlet/doubletsinglet
Overlap geneIgk, Gm1067
Upstream geneIl23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408
Downstream geneIgkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498, Igkv4-78, EG667621, Igkv13-76, Igkv4-75, Igkv13-74-1, LOC236047, Igkv13-73-1, EG628516, Gm1499, Igkv13-71-1, Igkv4-71, Gm1502, EG628541, Gm1419, Igkv12-67, Igkv12-66, Igkv4-65, Igkv13-64, EG628571, Igkv13-62-1, EG636752, Igkv13-61-1, Igkv4-61
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-046M15.T7 (MSMg01no046_m15.b1)MSMg01-046M15.TJ (MSMg01no046_m15.g1)
ACCAG277080AG277081
length651653
length of high quality
(start - end)		556 (45 - 600)523 (56 - 578)
definitionCHROMAT_FILE: MSMg01no046_m15.b1 PHD_FILE: MSMg01no046_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:01 2005CHROMAT_FILE: MSMg01no046_m15.g1 PHD_FILE: MSMg01no046_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AGCTCCTATTCCGAGAGGATCCGCGGAATTCCAGATTGCACAGTGGATCC
AGAGTAGATAAGAAGCTTATTAGTTTTCCCAGGTTTCTCTTGATACCAGG
CTAAATATGTCCTAATGCTCTTACTTGCCCTGCAATTAATAGTAATGGTT
TCTCCAGGAGATGCAGCAAGATAAGATGGAGACTGGGTTATCTGGACATC
ACACTGGGCACCTGGAATTGTACAATTGAAAATGAATCCTGACAGTTAAT
ATTATTGTAATCTACTTACCCTGAAAGAACAGGTGTTAGTAAACAACCTC
TGATGGATAAATTCCCAATAATATCCTTTTTTACCTGATGTCCAGAGCAG
AAGGAGCCCCAGAACCTGAACCTGGAACCTCATATCTAAACTGTGTCCTT
GCAGGAACTGATTGCTGCACTGGATATGATCAGCCTATTAAATAGTCTTC
AGAGTGATGCACTAAATTTTGGGCACATGCAAATCAGCAGGGGATGGGCA
GAGATATGTATAGCTACAGGGCTACTTCAGTCAAGCCACCCAGAATGGCA
TCTTTCCCTAAGTAGGAAAGTTCTATCTGAAGACAACTCATTTCTTTCTG
GCATCAAAAATATACTGAGTTCAATACTGATAAACTCAAGTATTTTGATT
C

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXAGAAATCTGCCTGCCTCTGCCTTCAAAGGGCTGGGATTAAAGGCA
TGTGCCACCACCACCTGGCTAACTACTGCCTCTTATGATCTTTATACCCC
TCTTCTGTAATAATGGTCCCTGAGCCTTGGAAATGACAGGTGATATAGAT
GCCTCATTTTAGGCTGAGCACAGCAATTATAATTAGTCATGTAATCATAT
ATTTATTATAATGTTACTCAGTCGCCATTCACTAAATAAAGAATCTTTTC
TCATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATATTAGATATTTTCTTTCTATATATTTCAAATGCTATCCCTAAAGTTTC
CTATACCCTCCCTCCACCCTGCTCCCCTACCCACCCACTCCCATTTCTTG
GCCCTGGCATTTCCCTGTACTGGGGCATATAAAGTTTGCAATACCAAGGG
GCCTCTCTTCCGAGTGATGGCCAACTAGGCCATCTTCTGCTACATATACA
GCTAGAGATATGAACTCTGGGGGTACTGGTTAGTTCATATTATTGTTCCA
CCTGTAGGGTTGCAAAACCCTTCAGTTCCTTGAGTACTTTCTCTAGCTTC
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no046_m15.b1 MSMg01no046_m15.b1 CHROMAT_FILE:
MSMg01no046_m15.b1 PHD_FILE: MSMg01no046_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:01 2005
         (556 letters)



>mm_chr6_68375182_68376134
          Length = 953

 Score = 1021 bits (528), Expect = 0.0
 Identities = 548/556 (98%), Gaps = 3/556 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggatccagagtagataagaagcttattagttttcccaggtttctcttgataccaggctaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 ggatccagagtagataagaagcttattagttttcccaggtttctcttgataccaggctaa 694

                                                                       
Query: 61  atatgtcctaatgctcttacttgccctgcaattaatagtaatggtttctccaggagatgc 120
           |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 atatttgctaatgctcttacttgccctgcaattaatagtaatggtttctccaggagatgc 634

                                                                       
Query: 121 agcaagataagatggagactgggttatctggacatcacactgggcacctggaattgtaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 agcaagataagatggagactgggttatctggacatcacactgggcacctggaattgtaca 574

                                                                       
Query: 181 attgaaaatgaatcctgacagttaatattattgtaatctacttaccctgaaagaacaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 attgaaaatgaatcctgacagttaatattattgtaatctacttaccctgaaagaacaggt 514

                                                                       
Query: 241 gttagtaaacaacctctgatggataaattcccaataatatccttttttacctgatgtcca 300
           ||||||||||||||||||||||||||||||||   |||||||||||||||||||| ||||
Sbjct: 513 gttagtaaacaacctctgatggataaattccc---aatatccttttttacctgatatcca 457

                                                                       
Query: 301 gagcagaaggagccccagaacctgaacctggaacctcatatctaaactgtgtccttgcag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 456 gagcagaaggagccccagaacctgaacctggaacctcatatctaaactgtgtcctggcag 397

                                                                       
Query: 361 gaactgattgctgcactggatatgatcagcctattaaatagtcttcagagtgatgcacta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gaactgattgctgcactggatatgatcagcctattaaatagtcttcagagtgatgcacta 337

                                                                       
Query: 421 aattttgggcacatgcaaatcagcaggggatgggcagagatatgtatagctacagggcta 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 336 aattttgggcacatgcaaatcagcaggagatgggcagagatatgtatagctacagggcta 277

                                                                       
Query: 481 cttcagtcaagccacccagaatggcatctttccctaagtaggaaagttctatctgaagac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 cttcagtcaagccacccagaatggcatctttccctaagtaggaaagttctatctgaagac 217

                           
Query: 541 aactcatttctttctg 556
           ||||||||||||||||
Sbjct: 216 aactcatttctttctg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 953
Length adjustment: 10
Effective length of query: 546
Effective length of database: 943
Effective search space:   514878
Effective search space used:   514878
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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