Query= MSMg01no047_h20.b1 MSMg01no047_h20.b1 CHROMAT_FILE:
MSMg01no047_h20.b1 PHD_FILE: MSMg01no047_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:50 2005
(611 letters)
>mm_chr6_75139914_75140924
Length = 1011
Score = 951 bits (492), Expect = 0.0
Identities = 533/550 (96%), Gaps = 8/550 (1%)
Strand = Plus / Minus
Query: 4 ggaattctgtttggcaggaaaatgataaaggaagaaatatttctataaaatgtcaataca 63
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct: 549 ggaattctgtttggcaggaaaatgataaaggaagaaatctttttataaaatgtcaataca 490
Query: 64 aagctgtctttttctagctttctctttttttctttttaagaatatctcttcattctcatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aagctgtctttttctagctttctctttttttctttttaagaatatctcttcattctcatt 430
Query: 124 tgaaagcatgctactagaagtaggcagcatcccaactagccaattagtgtactaagatta 183
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 429 tgaaagcatactactagaagtaggcagcatcccaactagccaattagtatactaagatta 370
Query: 184 atgtgaaaagtgcaacataaataaagtagaacattgtgtgtagctgtccaaaaagaactg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atgtgaaaagtgcaacataaataaagtagaacattgtgtgtagctgtccaaaaagaactg 310
Query: 244 tgcttttgtttgttccaaagacaaggagaaagctcctctgagattagtggtttttatcat 303
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tgctaatgtttgttccaaagacaaggagaaagctcctctgagattagtggtttttatcat 250
Query: 304 ggtacttattgagtgtttaaagcattaaaatttcaaactcacaag------tgcataaac 357
||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 249 ggtacttattgagtgtttaaagcattaaaatttcaaactcacaagttttcttgcataagc 190
Query: 358 aa-aaaaaaacatattacttttctatgaaatatgtcatgcaagatatcccaagataaata 416
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aagaaaaaaa-atattacttttctatgaaatatgtcatgcaagatatcccaagataaata 131
Query: 417 tagtgaggaacaaaaggtatttacaatgtgtattagtcatggttctctagagtcacagaa 476
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct: 130 tagtgaggaacaaaaggtatttacgatgtgtattagtcagggttctctagagtcacagaa 71
Query: 477 cttatggatagtctctatatagtaaaggaatttattgatgacttacggtctgtagtccaa 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70 cttatggatagtctctatatagtaaaggaatttattgatgacttacggtctgtagtccaa 11
Query: 537 ttcccaacaa 546
||||||||||
Sbjct: 10 ttcccaacaa 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space: 601601
Effective search space used: 601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_h20.g1 MSMg01no047_h20.g1 CHROMAT_FILE:
MSMg01no047_h20.g1 PHD_FILE: MSMg01no047_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:51 2005
(553 letters)
>mm_chr6_75125340_75126293
Length = 954
Score = 1009 bits (522), Expect = 0.0
Identities = 546/554 (98%), Gaps = 1/554 (0%)
Strand = Plus / Plus
Query: 1 cagagggtctggctattagtggggtataaaatgagtcagtgactactgccattggtttta 60
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct: 201 cagagggtctggctattagtggggtataaaatgagtcagtgacaactgcaattggtttta 260
Query: 61 gataaaaaggaataaaaatgcagggacagccgaagagatttaagatgcttaagagagctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gataaaaaggaataaaaatgcagggacagccgaagagatttaagatgcttaagagagctg 320
Query: 121 gagtgcttcctgtgattaagtttaactactcccg-agaagggagatggatgaatccatct 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 gagtgcttcctgtgattaagtttaactactcccggagaagggagatggatgaatccatct 380
Query: 180 gaaggaaaatgtgatgaaagcttgaaaaggctccaagtcatcctctgagttcttgcttcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaggaaaatgtgatgaaagcttgaaaaggctccaagtcatcctctgagttcttgcttcc 440
Query: 240 tagtgatatagtctacagctaaagcctatacaaatgctgctgtgcaaatggtatgtacct 299
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||
Sbjct: 441 tagtgatatagtctacagctaaagcctatacagatgctgctgtgcaaatcatatgtgcct 500
Query: 300 ctacttagtattctaaacgtggtcagtgatgtgaacacacaatatctaacttgatttcag 359
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctacttagtattctaaacgcggtcagtgatgtgaacacacaatatctaacttgatttcag 560
Query: 360 ccggaattaattcaaatgtacaaagtctagaatctgttggcaatactttcatataagaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccggaattaattcaaatgtacaaagtctagaatctgttggcaatactttcatataagaca 620
Query: 420 agttgaactacttcacagccaaggtaaacagctcttcaaagtgtttcccaggcaaaactg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agttgaactacttcacagccaaggtaaacagctcttcaaagtgtttcccaggcaaaactg 680
Query: 480 tatcagcaaagataatttaggatggaaactgactatctaaaataggaatacctgagagaa 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tatcagcaaagataatttaggatggaaactgactatctaaaataggaatacctgagagaa 740
Query: 540 actgatcagctaaa 553
||||||||||||||
Sbjct: 741 actgatcagctaaa 754
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 954
Length adjustment: 10
Effective length of query: 543
Effective length of database: 944
Effective search space: 512592
Effective search space used: 512592
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
