BAC Information

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BAC

Clone NameMSMg01-047J04
Chromosome6 (Build37)
Map Location 93,781,232 - 93,781,438
singlet/doubletsinglet
Overlap geneMagi1
Upstream geneA730049H05Rik, LOC384461, LOC100043253, LOC665831
Downstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047J04.T7 (MSMg01no047_j04.b1)MSMg01-047J04.TJ (MSMg01no047_j04.g1)
ACCAG277593AG277594
length873717
length of high quality
(start - end)
210 (46 - 255)629 (77 - 705)
definitionCHROMAT_FILE: MSMg01no047_j04.b1 PHD_FILE: MSMg01no047_j04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:56 2005CHROMAT_FILE: MSMg01no047_j04.g1 PHD_FILE: MSMg01no047_j04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:07:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTGTCTTCCATTCTCTGGGCTTGCATGCGGATCACTATGACTGC
CCAGCATTTATGGACGGGTGCTGAAGAATGTGTACAGTGTCAGAAAAGGG
GGAATGGAGGTGGCAGAGAGTCTGAAGGACAGGTATAGTGGAGGAATAGG
AAGGGCAGGGTGGGAAAGCTCTGAAGGAGGAATAGGAGGAGTTGGATGGG
TGAGACCCCCCCCCNNCCCCCTCNCCCCCCCTNCTCCTTTTCCTTTCCCT
ACTTCTCTCCTCCCCCCCCCCCTCCTTTTTTCCTTTTTTTCCCCGCCTTA
TTCCCCTTTTTCCGCTCTTTTTCCCCTCCTTCCTCCTCTCTCCTTTTCTT
CCCTCCTTCTTTCCCCCTCCTTTTTTTTTTTCCCCCCTCTTTTNTCTTTC
TTCCTTCCTCTTCCTCTTCTTGTGGTGCGCTCCCTTGTTTTCCCCTTTTC
TTCTTCCTCTTTTCTTCTCTCTCCCTCTTTCCCCTTCCCTTTTTCCTCTT
CCCCTTTTCCTCCCTTTTCCCTCTTCCTGCTTTATTCCTTTCCCTATATT
ATTTTCTTTATTTCCCTACTTTTTTTTCAACCTCTTACCCCTCCTTACCG
CTATCCCCGATATACTTCTTTTCCCTTTTTGTTTTTCCACCTTTCTCTAT
ATTTCCTCCCCCCCTAGCCTCTCACTCCTCTCGTCTTCCCCCCCCTCTCC
TCTCTCTATTTTATCCCTTCTCTCTCACCCTCCCACCGCCCTTTCTTGTT
TTTGTCCGTCACCTCCTCTCCTAATCATCACCTTTCCACTATCTTCCCTA
TTTACCTACTCCCCCTCCTCCCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGTGTTTTGATCTCATTTACCC
CATACACCAGCTCCTCCCTTACTCATCCTCCATCTCCCTACACACTCAAC
ACACCTCAATTTTAAAAATCCACTGAGTCTTGTTTATACTGCAAAACTAT
CCTTAGATGGAGGCCTTCCACTGGGCCTGTCCGTCTATCAGGGGTAACAC
TCTTAAAACACTCTGTTTATTCTCCAGCAGTTGCTCTTTAGCAAGGGAAG
CTCTGCTCTACTCCCTTCTCCTGTCTGAGATTTTATCTGACTTGAGCTTG
TGCAGGTCGTATATGTATGCTGGAACAATCACTGTGAGTTTGTATGTGCA
AGTGCTCTGCTGTATCCAGGAAACGCTGTTTCTGCGTAGACATCCGCTAT
TACCGGTATTTACAATCCTTCAGCTTGCTCTCCTACAAGGATTCCTGAGC
TTTCTATTTTAGGAGTGAGCCTTCCGCGGTCTCTTATTCTGTGCACCTAG
ACCACTTGTGGATGTCTGTATTAACAACCATCTACTACAAACAGGAGTTT
CTCTAATGAGGGTTGAGAAATATATTAATCTGTGGGCATAATGGTAAGTC
TGTTTACCANAAGACTAGTAGTAGGTTCTCCCTATGATCTATCTGTATGG
GTTTCATCTTGTGAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_j04.b1 MSMg01no047_j04.b1 CHROMAT_FILE:
MSMg01no047_j04.b1 PHD_FILE: MSMg01no047_j04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:07:56 2005
         (210 letters)



>mm_chr6_93781029_93781638
          Length = 610

 Score =  400 bits (207), Expect = e-116
 Identities = 207/207 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccttgtcttccattctctgggcttgcatgcggatcactatgactgcccagcatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ggaattccttgtcttccattctctgggcttgcatgcggatcactatgactgcccagcatt 351

                                                                       
Query: 64  tatggacgggtgctgaagaatgtgtacagtgtcagaaaagggggaatggaggtggcagag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 tatggacgggtgctgaagaatgtgtacagtgtcagaaaagggggaatggaggtggcagag 291

                                                                       
Query: 124 agtctgaaggacaggtatagtggaggaataggaagggcagggtgggaaagctctgaagga 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 agtctgaaggacaggtatagtggaggaataggaagggcagggtgggaaagctctgaagga 231

                                      
Query: 184 ggaataggaggagttggatgggtgaga 210
           |||||||||||||||||||||||||||
Sbjct: 230 ggaataggaggagttggatgggtgaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 610
Length adjustment: 9
Effective length of query: 201
Effective length of database: 601
Effective search space:   120801
Effective search space used:   120801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)