BAC Information

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BAC

Clone NameMSMg01-047K10
Chromosome6 (Build37)
Map Location 65,719,266 - 65,900,168
singlet/doubletdoublet
Overlap genePrdm5
Upstream geneLOC100041833, LOC667115, Smarcad1, Ptgds2, LOC100042741, LOC100041858, LOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160
Downstream gene4930544G11Rik, Ppia-ps6_651.1, LOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047K10.T7 (MSMg01no047_k10.b1)MSMg01-047K10.TJ (MSMg01no047_k10.g1)
ACCAG277642AG277643
length705718
length of high quality
(start - end)
577 (46 - 622)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no047_k10.b1 PHD_FILE: MSMg01no047_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:01 2005CHROMAT_FILE: MSMg01no047_k10.g1 PHD_FILE: MSMg01no047_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,899,595 - 65,900,168)(65,719,266 - 65,719,557)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATATCTCCAAAACTGTAAGAAACAAATTTCTGTTCATTGAAAAT
TATTTGCTGTCAGGTATTTTTCTACAGAACAAAATAGAGTCAGATAGCTC
TATACCATGAAGTGAGGTCATGGGCCATGTAGTAATTTTATTTTGCATGG
TTTTAGGAGTATACATGAAGTTGTTCAGGGTGGTTATATTGCTTTTTCTA
CTGACAAACTGCTATATCACAGAATGAAAAAAGTCCCTCCAACAACAGCA
AACTCTCTATATAGCATTCAGAGATGGGTATGGACTGGGGAGCCCTCTCC
CCTGGTAACCATTATTTATAAGATCAGATCCTCATAAGCCCTTTCCCTGC
TCCACTGGTGGAAAGCTAATGATTCCAATCGTATGCACTTCTCCTTTGGG
TAATATCTTAGTTGAGGTTTCTATTGTTCTGATGAAATACCATTACTAAA
GCAACTTTGGGAGTAAATGATTTGTTTCCCTTACATTTTCATATCACTAT
AAGAAGTCAGGCCAGGAACCTGGAGGCAGTAGCTGGTGCAAAGTCCATAG
AGGAGTGTTTCTTGCTAGCTTGTTTCTCATGGCTTGCTCTGCCTGATTTC
CTAAAGGACCTGCGAACATTAGTCTGGAAATACTACCTCTCACAATGAGT
TGGAN
CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATTCCTCCACATTTCCCTACCGA
GTGAGCTTTAATGAGCACTGCAATTTCATGCATAAAGTATTTCTTGCAAC
ATTCAACAGCACTGAAGCTCTCAGTGACTGGCAGGAAATGGGAAAAGAGG
CAGAAAGAGGGAAGGGTGTGTGTGTAAACTACTGAACCCAGGATTCCAAA
ATAAATTAGTCAAATGTCTGCAAAATCACCTGATATTACCTCCTCGCTAG
CTGCCACTTTCCTGAAAGTCCCTGCAGGTACCTCTGACATTGACTCTAAC
ACCCTTGCCTAGATACTAGAGTAGTGCTAGCACGTATGTGGTGGGTCTTT
GTAAGAGTTATTACTTATTGACTGTTTCTCCAAGCTGGGAACCAGGCTAA
CCGAAAAAAGTATTTAGTTCTGTTGGGGATAGTTAACTATGTTCTTTGTT
TTAGTTGTAAAGCATTTACTACATTCATAACTAGCTGAAGAATATAAGCA
CCAAAATATTCCAAGGTGCTGAATTGACAGTCATCAAAAATACCTCACCA
GGACATGGTGCACACCTTTTAGTCAGCACTTAGGAGGTCCAAGAAATAGG
ATCAGAAGTGAGACAAGGGAACCCTGCCTCACACTAGGTTATTTTAAGCC
AATAGTGCACACAGGTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_k10.b1 MSMg01no047_k10.b1 CHROMAT_FILE:
MSMg01no047_k10.b1 PHD_FILE: MSMg01no047_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:01 2005
         (577 letters)



>mm_chr6_65899463_65900439
          Length = 977

 Score = 1071 bits (554), Expect = 0.0
 Identities = 569/574 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatatctccaaaactgtaagaaacaaatttctgttcattgaaaattatttgct 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 ggaattccatatctccaaaactgtaagaaacaaatttctgttcattgaaaattatttgct 647

                                                                       
Query: 64  gtcaggtatttttctacagaacaaaatagagtcagatagctctataccatgaagtgaggt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtcaggtatttttctacagaacaaaatagagtcagatagctctataccatgaagtgaggt 587

                                                                       
Query: 124 catgggccatgtagtaattttattttgcatggttttaggagtatacatgaagttgttcag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 586 catgggccatgtagtaattttattttgcatggttttaggagtatacatgaacttgttcag 527

                                                                       
Query: 184 ggtggttatattgctttttctactgacaaactgctatatcacagaatgaaaaaagtccct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ggtggttatattgctttttctactgacaaactgctatatcacagaatgaaaaaagtccct 467

                                                                       
Query: 244 ccaacaacagcaaactctctatatagcattcagagatgggtatggactggggagccctct 303
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 466 ccaacaacagcaaactctctatatagcattcagagatgggtatggactggagagccctct 407

                                                                       
Query: 304 cccctggtaaccattatttataagatcagatcctcataagccctttccctgctccactgg 363
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 cccctggtaaccattaattataagatcagatcctcataagccctttccctgctccactgg 347

                                                                       
Query: 364 tggaaagctaatgattccaatcgtatgcacttctcctttgggtaatatcttagttgaggt 423
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 346 tggaaagctaatgattccaaacgtatgcacttctcctttgggtaatatcttagttgaggt 287

                                                                       
Query: 424 ttctattgttctgatgaaataccattactaaagcaactttgggagtaaatgatttgtttc 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 ttctattgttctgatgaaataccattactaaagcaactttgggagtaaatgatttgtttc 227

                                                                       
Query: 484 ccttacattttcatatcactataagaagtcaggccaggaacctggaggcagtagctggtg 543
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 226 ccttacattttcatatcactataagaagtcagtccaggaacctggaggcagtagctggtg 167

                                             
Query: 544 caaagtccatagaggagtgtttcttgctagcttg 577
           ||||||||||||||||||||||||||||||||||
Sbjct: 166 caaagtccatagaggagtgtttcttgctagcttg 133


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no047_k10.g1 MSMg01no047_k10.g1 CHROMAT_FILE:
MSMg01no047_k10.g1 PHD_FILE: MSMg01no047_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:01 2005
         (292 letters)



>mm_chr6_65719066_65719757
          Length = 692

 Score =  565 bits (292), Expect = e-165
 Identities = 292/292 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattcctccacatttccctaccgagtgagctttaatgagcactgcaatttcatgcataaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcctccacatttccctaccgagtgagctttaatgagcactgcaatttcatgcataaa 260

                                                                       
Query: 61  gtatttcttgcaacattcaacagcactgaagctctcagtgactggcaggaaatgggaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtatttcttgcaacattcaacagcactgaagctctcagtgactggcaggaaatgggaaaa 320

                                                                       
Query: 121 gaggcagaaagagggaagggtgtgtgtgtaaactactgaacccaggattccaaaataaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaggcagaaagagggaagggtgtgtgtgtaaactactgaacccaggattccaaaataaat 380

                                                                       
Query: 181 tagtcaaatgtctgcaaaatcacctgatattacctcctcgctagctgccactttcctgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagtcaaatgtctgcaaaatcacctgatattacctcctcgctagctgccactttcctgaa 440

                                                               
Query: 241 agtccctgcaggtacctctgacattgactctaacacccttgcctagatacta 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtccctgcaggtacctctgacattgactctaacacccttgcctagatacta 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)