BAC Information

Click to search

BAC

Clone NameMSMg01-047L09
Chromosome6 (Build37)
Map Location 54,747,453 - 54,747,957
singlet/doubletsinglet
Overlap genenone
Upstream gene1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3, Scrn1, Fkbp14, Plekha8, LOC100041292, 2410066E13Rik
Downstream geneZnrf2, Nod1, A030007L17Rik, Gars, Crhr2, Inmt, C330043M08Rik, Aqp1, Ghrhr, Adcyap1r1, LOC100042219, Neurod6, LOC100041339
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-047L09.T7 (MSMg01no047_l09.b1)MSMg01-047L09.TJ (MSMg01no047_l09.g1)
ACCAG277682AG277683
length680685
length of high quality
(start - end)		576 (47 - 622)505 (77 - 581)
definitionCHROMAT_FILE: MSMg01no047_l09.b1 PHD_FILE: MSMg01no047_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:06 2005CHROMAT_FILE: MSMg01no047_l09.g1 PHD_FILE: MSMg01no047_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:08:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTGTTTGATT
TTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCT
CTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTT
CTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCAC
TTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCTTTGA
TCCATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGC
ATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAAT
GCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGT
GACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGG
TCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGC
TCTGTAGTAAAGCTTTACGTCCGGTTTGTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAATGAAGAAAGTAAAAGATGGA
AATGGGAGATATAATAGTCACCAACGAAAGGCAAAGAATCATAAGAAAGT
ACTTAAAAAACCTGAAGTTCTTGCCTTGGCTTCCCCTCAACGATAGGTTG
TATCCTGTGAGCCAAATAAACATTCCTCTACAAAAGTTGTGTTGAGTCTC
TACATTGCCCTTTTGCATTGACTCTGCACTGTCTCTTTAACACCAACATC
CTTTCTGTAACCTATATATAACTGTGTGATGGTATGTGTGTTTTGAGTGT
TATAGGTATCAGTAACACTGGAATAAAGAACTTGGAACTGCCAAAGTCAA
GATTGCAAGGGAAGCCAGAAGTAGCCCATGAAGTAAAGCCGACGTAGCTT
GTGAGTCTAGTGCTATTCAATGAGTTCTGACACTGTGTCTGTCTACACTG
ATGACATCACTCACTCACCACTGACATCGGTAACCTTATTGGTCTTGTTC
CCATTATCCAGTTTACCCAGTTTTCTGGTAGCTGTAGAAGGCCACTACGC
ACAGCTCAGAGATGAGAAGACTCACTCCAGTCTACCTTTCTGGAAGCTTT
CTGAATCACCCAATTGAGAGAGAGTTTTACTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no047_l09.g1 MSMg01no047_l09.g1 CHROMAT_FILE:
MSMg01no047_l09.g1 PHD_FILE: MSMg01no047_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:06 2005
         (505 letters)



>mm_chr6_54747101_54748005
          Length = 905

 Score =  938 bits (485), Expect = 0.0
 Identities = 500/505 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgaagaaagtaaaagatggaaatgggagatataatagtcaccaacgaaaggcaaag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 857 caaatgaagaaagtaaaagatggaaatgggagatataatagtcaccaaggaaaggcaaag 798

                                                                       
Query: 61  aatcataagaaagtacttaaaaaacctgaagttcttgccttggcttcccctcaacgatag 120
           |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct: 797 aatcataagaaagtactttaaaaacctgaagttcttgccttggcttcccctcaatgatag 738

                                                                       
Query: 121 gttgtatcctgtgagccaaataaacattcctctacaaaagttgtgttgagtctctacatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 gttgtatcctgtgagccaaataaacattcctctacaaaagttgtgttgagtctctacatt 678

                                                                       
Query: 181 gcccttttgcattgactctgcactgtctctttaacaccaacatcctttctgtaacctata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gcccttttgcattgactctgcactgtctctttaacaccaacatcctttctgtaacctata 618

                                                                       
Query: 241 tataactgtgtgatggtatgtgtgttttgagtgttataggtatcagtaacactggaataa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tataactgtgtgatggtatgtgtgttttgagtgttataggtatcagtaacactggaataa 558

                                                                       
Query: 301 agaacttggaactgccaaagtcaagattgcaagggaagccagaagtagcccatgaagtaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 agaacttggaactgccaaagtcaagattgcaagggaagccagaagtagcccatgaagtaa 498

                                                                       
Query: 361 agccgacgtagcttgtgagtctagtgctattcaatgagttctgacactgtgtctgtctac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agccgacgtagcttgtgagtctagtgctattcaatgagttctgacactgtgtctgtctac 438

                                                                       
Query: 421 actgatgacatcactcactcaccactgacatcggtaaccttattggtcttgttcccatta 480
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 437 actgatgacatcactcactcaccactgacatcggtaaccttattggccttgttcccatta 378

                                    
Query: 481 tccagtttacccagttttctggtag 505
           |||||||||||||| ||||||||||
Sbjct: 377 tccagtttacccagctttctggtag 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space:   443025
Effective search space used:   443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |