CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTTCTGTAACAGTACTGTTTGGCTATTTGTTGCATATTTTGTGT
AGTCTGGATTATTTGTGGTTACTTCCTTGGTGATGGACACATAGGTATCC
AATCTGACCTGTATCTTTTAAAATCAGTCATTATGATATGAGACTATGGA
CTTTTGATCAAAGGCAATGGAGCAATTCTCTCAAACCCTGCTTTCAAATA
GTATTCTACAAATTAAGCTAGTGCCCAGAGTGCTTCTGGAGTTTAATGTG
GCCTGATGTCTATAAGCTTGAATTTTATGTATGTTGAGCCAGGAGGTCAC
AGCCAGCACTTAACAGCACTTCTTGAAACAAGTGTGTACAAAGCCATGAG
TGGTTCTTCAATCCCACATACTTCGGGGATCGTTTTCTGATGGTCTGTGG
TTGCTCCTCTTCAGAGCAAATTTTCTATAACACCCACGAGGCATGTAAAA
GTATTAACTCTTCCAGGGGCATCGGACTTAATCGTAGGCAAGAGACATTT
GCTCATCTCAGTCTGTGTAATGTAACAAGTTTGGTTACCTAGCTTTCAAA
GATCAACAAACTAGACTATTATTTTGTGTGGAAGGAATCCACTGTTAAAT
CACTTAGAATTAATGCAACTAAGTTGTGCAT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAA
ATCCGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAG
TGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAA
GTGGATATTAGCCCAAAACCTAGGATACCCAAGAT

Query= MSMg01no047_l21.b1 MSMg01no047_l21.b1 CHROMAT_FILE:
MSMg01no047_l21.b1 PHD_FILE: MSMg01no047_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:08 2005
         (610 letters)



>mm_chr6_4014269_4015278
          Length = 1010

 Score = 1127 bits (583), Expect = 0.0
 Identities = 601/607 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcattttctgtaacagtactgtttggctatttgttgcatattttgtgtagtctgg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattttctgtaacagtactgtttggctatttgttgcatattttgtgtagtctgg 263

                                                                       
Query: 64  attatttgtggttacttccttggtgatggacacataggtatccaatctgacctgtatctt 123
           |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 attatttgtggttacttcctcggtgatggacacataggtacccaatctgacctgtatctt 323

                                                                       
Query: 124 ttaaaatcagtcattatgatatgagactatggacttttgatcaaaggcaatggagcaatt 183
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 324 ttaaaatcagtcattatgatatgagactatggacttttgatcaaaagcaatggagcaatt 383

                                                                       
Query: 184 ctctcaaaccctgctttcaaatagtattctacaaattaagctagtgcccagagtgcttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctctcaaaccctgctttcaaatagtattctacaaattaagctagtgcccagagtgcttct 443

                                                                       
Query: 244 ggagtttaatgtggcctgatgtctataagcttgaattttatgtatgttgagccaggaggt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ggagtttaatgtggcctgatgtctataagcttgaattttatgtatgttgagccaggaggt 503

                                                                       
Query: 304 cacagccagcacttaacagcacttcttgaaacaagtgtgtacaaagccatgagtggttct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cacagccagcacttaacagcacttcttgaaacaagtgtgtacaaagccatgagtggttct 563

                                                                       
Query: 364 tcaatcccacatacttcggggatcgttttctgatggtctgtggttgctcctcttcagagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tcaatcccacatacttcggggatcgttttctgatggtctgtggttgctcctcttcagagc 623

                                                                       
Query: 424 aaattttctataacacccacgaggcatgtaaaagtattaactcttccaggggcatcggac 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 624 aaattttctataacacccacgaggcatgtaaaagtattaactcttccaggggcattggac 683

                                                                       
Query: 484 ttaatcgtaggcaagagacatttgctcatctcagtctgtgtaatgtaacaagtttggtta 543
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttaatcgtaagcaagagacatttgctcatctcagtctgtgtaatgtaacaagtttggtta 743

                                                                       
Query: 544 cctagctttcaaagatcaacaaactagactattattttgtgtggaaggaatccactgtta 603
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cctagctatcaaagatcaacaaactagactattattttgtgtggaaggaatccactgtta 803

                  
Query: 604 aatcact 610
           |||||||
Sbjct: 804 aatcact 810


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)