Query= MSMg01no047_m11.b1 MSMg01no047_m11.b1 CHROMAT_FILE:
MSMg01no047_m11.b1 PHD_FILE: MSMg01no047_m11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:11 2005
(639 letters)
>mm_chr6_74838305_74839343
Length = 1039
Score = 671 bits (347), Expect = 0.0
Identities = 368/375 (98%), Gaps = 1/375 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtacataaaatctactcttttcttgaaagttaatatttaattgaaaattcaa 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 ggaattctgtacatagaatctactcttttcttgaaagttaatatttaattgaaaattcaa 320
Query: 64 ttcaatgatttgtggctatttttttaaaaactggtttatcaattaatagcaaatcatttt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ttcaatgatttgtggctatttttttaaaaactggtttatcaattaatagcaaatcatttt 260
Query: 124 tgttgttatagtttctgttcaagttattgcagctgcgtggatgagaagcgtctctgctag 183
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct: 259 tgttgttatagtttctgttcaagttattgcagctgcgtggataagaagcgtctctgatag 200
Query: 184 acaaccggcgaccttcctggtgagagcacagggatccacccggcccgagaggtttctgcc 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 acaaccggcgaccttcctggtgagagcacagggatccacccggcccgagaggtttctgcc 140
Query: 244 tcaggctccactagagccaccttggttccaggactccactgagggcaggctgcacgggtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 tcaggctccactagagccaccttggttccaggactccactgagggcaggctgcacgggtg 80
Query: 304 agggtgtggaatacagaggccagcagtttctggga-aggcgagagccagagagcttgtga 362
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||| |||
Sbjct: 79 agggtgtggaatacagaggccagcagtttctggtacaggcgagagccagagaccttctga 20
Query: 363 ggcggcaccattttc 377
|||||||||||||||
Sbjct: 19 ggcggcaccattttc 5
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_m11.g1 MSMg01no047_m11.g1 CHROMAT_FILE:
MSMg01no047_m11.g1 PHD_FILE: MSMg01no047_m11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:11 2005
(472 letters)
>mm_chr6_74780172_74781043
Length = 872
Score = 864 bits (447), Expect = 0.0
Identities = 469/487 (96%), Gaps = 17/487 (3%)
Strand = Plus / Plus
Query: 1 agtttgaatcaatcagtttggagagaaatttggaccagaacagctcagtcaaaccagcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 agtttgaatcaatcagtttggagagaaatttggaccagaacagctcagtcaaaccagcca 243
Query: 61 gagttgagaaagagatagaaatggtgagtttattcagcagtaagcctccaagatggcaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gagttgagaaagagatagaaatggtgagtttattcagcagtaagcctccaagatggcaat 303
Query: 121 tatatctggcaaataaaagtcacttttagaacaggcatgatataggtcccatactaactt 180
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tatatctggcaaataaaaatcacttttagaacaggcatgatataggtcccatactaactt 363
Query: 181 tttcactgtaaatagctgcatcttttgtaggtcacctccccaagatcatggtagacagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tttcactgtaaatagctgcatcttttgtaggtcacctccccaagatcatggtagacagaa 423
Query: 241 ttcctaaatagaaaacatagatgatccaaagatatcactaattactgggaagttaataat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ttcctaaatagaaaacatagatgatccaaagatatcactaattactgggaagttaataat 483
Query: 301 agttccttggggaaagaaaataactgtgtgtatttttgtttttttt-------------- 346
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 agttccttggggaaagaaaataactgtgtgtatttttgttttttttttttttttgttgtt 543
Query: 347 ---gttgttgttgtatttggccactagtaatatttctatgttctgatgaatgaatggtct 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gttgttgttgttgtatttggccactagtaatatttctatgttctgatgaatgaatggtct 603
Query: 404 tatgtcctttcaagagttggaattagtgggcttttgagaggggagagagagagagagaga 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 tatgtcctttcaagagttggaattagtgggcttttgagaggggagagagagagagagaga 663
Query: 464 gagagag 470
|||||||
Sbjct: 664 gagagag 670
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
