Query= MSMg01no047_p22.b1 MSMg01no047_p22.b1 CHROMAT_FILE:
MSMg01no047_p22.b1 PHD_FILE: MSMg01no047_p22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:26 2005
(584 letters)
>mm_chr6_110191859_110192842
Length = 984
Score = 1031 bits (533), Expect = 0.0
Identities = 569/581 (97%), Gaps = 2/581 (0%)
Strand = Plus / Plus
Query: 5 gaattccacataccctgcaagaaacaagccaggagaccacaagaccgagagacaaagaaa 64
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccacataccctacaagaaacaagccaggagaccacaagaccgagagacaaagaaa 264
Query: 65 ctttatagccaaaatggttgaggttacacaggactcaaaggatctggggattagtaaaag 124
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 265 ttttatagccaaaatggttgaggttacataggactcaaaggatctggggattagtaaaag 324
Query: 125 taagttcagaggctggggatattaaaggtagatggcagggtatgccagccaggatggctc 184
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taagttcagaggctggggagattaaaggtagatggcagggtatgccagccaggatggctc 384
Query: 185 tgtaataggaaccctacatctgagtgtggactgaggaagattggtagctagaattaagta 244
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 385 tgtaataggaaccctacatctgagtggggactgaggaagattggtagctagaattaagta 444
Query: 245 ataca-ccatttgtctcagttttttgagacctaatgtgtttttgtatatgtgcatgcatg 303
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ata-agccatttgtctcagttttttgagacctaatgtgtttttgtatatgtgcatgcatg 503
Query: 304 tatatagatatgctgtagttcttaataaaatacaacacatttaagtcagtgacccacaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tatatagatatgctgtagttcttaataaaatacaacacatttaagtcagtgacccacaga 563
Query: 364 atgtagtgatctagagaaaataacagttatgcaacaatgaagaaacaaattattattacc 423
||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 564 atgtagtgacctagagaaaataagagttatgcaacaatgaagaaacaaattcttattacc 623
Query: 424 acttttatgtgacatatcaaaaattttgttcatgaatttgatgttaggtataaggtctgc 483
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 624 acttttatatgacatatcaaaaattttgttcatgaatttgatgttaggtataaggtctac 683
Query: 484 aatgcttcaggccacttagcttcctaaacatgcatttctttagaaacatgctgtgatggt 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aatgcttcaggccacttagcttcctaaacatgcatttctttagaaacatgctgtgatggt 743
Query: 544 ttgtatattcttggaccagggagtggcaccatttggaggtg 584
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 ttgtatattcttggaccagggagtggcaccatttggaggtg 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no047_p22.g1 MSMg01no047_p22.g1 CHROMAT_FILE:
MSMg01no047_p22.g1 PHD_FILE: MSMg01no047_p22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:08:26 2005
(656 letters)
>mm_chr6_110247486_110248541
Length = 1056
Score = 795 bits (411), Expect = 0.0
Identities = 498/579 (86%), Gaps = 80/579 (13%)
Strand = Plus / Minus
Query: 78 tatagggaactttcgggatagcatttgaaatgtaaataaagaagatatctaataaaaatg 137
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tataggaaactttcgggatagcatttgaaatgtaaataaagaagatatctaataaaaatg 997
Query: 138 aagtaatggtaaattaaaaagaaagaaaggaagaaagaaagaaagaaagaaagaaagaaa 197
||||||||||||||||||||||||||||||
Sbjct: 996 aagtaatggtaaattaaaaagaaagaaagg------------------------------ 967
Query: 198 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaggaaggaa 257
||||||||||||||||||||||||||||||||||
Sbjct: 966 --------------------------aagaaagaaagaaagaaagaaagaaaggaaggaa 933
Query: 258 ggaaggaaggaaggaaggaaggaaggaaggaaggaagaaagaaagaaagaaagaaagaaa 317
|||||||||||||||||||||| ||||||||||||||
Sbjct: 932 ggaaggaaggaaggaaggaagg------------------------aagaaagaaagaaa 897
Query: 318 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagatataagaacaagaa 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagatataagaacaagaa 837
Query: 378 gactgattttccagctcagagccaataaaatagaacagctacagaagaaaaggggttttg 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 gactgattttccagctcagagccaataaaatagaacagctacagaagaaaaggggttttg 777
Query: 438 tactatgtactgtagaaataattttgatgtgtcacaaaaaaaaaaaaagcatggaatggt 497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tactatgtactgtagaaataattttgatgtgtcacaaaaaaaaaaaaagcatggaatggt 717
Query: 498 tttattccaggaagggaggaaatgagcacttggtttctctctcaagtagtcaaattctat 557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tttattccaggaagggaggaaatgagcacttggtttctctctcaagtagtcaaattctat 657
Query: 558 aatagggaagtttcatatgcccatcaaatttatctgtttctaaaaggatggtaaaccaat 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aatagggaagtttcatatgcccatcaaatttatctgtttctaaaaggatggtaaaccaat 597
Query: 618 tcttcttagaactttaaaagaaaatgtgtgattgaaccc 656
|||||||||||||||||||||||||||||||||||||||
Sbjct: 596 tcttcttagaactttaaaagaaaatgtgtgattgaaccc 558
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 141
Number of extensions: 45
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 40
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space: 675716
Effective search space used: 675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
