BAC Information

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BAC

Clone NameMSMg01-048E14
Chromosome6 (Build37)
Map Location 75,588,646 - 75,589,428
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
Downstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048E14.T7 (MSMg01no048_e14.b1)MSMg01-048E14.TJ (MSMg01no048_e14.g1)
ACCAG278090AG278091
length1,2651,272
length of high quality
(start - end)		747 (78 - 824)700 (71 - 770)
definitionCHROMAT_FILE: MSMg01no048_e14.b1 PHD_FILE: MSMg01no048_e14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:03 2005CHROMAT_FILE: MSMg01no048_e14.g1 PHD_FILE: MSMg01no048_e14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTACAGTGGGCGTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CATTATACATGATTAGACCTCTTATGCCAGGCAGATGTGTCTTACATGAC
AATGTGCAAGCCTTCACTTAGTGCACAAAGAAGCATTATTATTATTATTA
ATTATTGATAGTTCTAAGTACAAACCACAGAAAGATAGAGTACTGGGAGA
CTAAGAACTTTCTGTGTAACTTTGCAGACCTCATGTCAAAGTAGAGAATG
GAACAGAATAAAAGGCTCTATGTATGTCCCAGCAGTGAAAACTGTGAACA
AAATAATTGTGTTGGAGGCTGAAAAGATTTTTTTTTTCCTGAGAAAGAAA
TCTAGCTTCCTCAACAATTAATATTTATGCACAAAGATTTTATTCATCTG
TAGATGCTCAAAAACATCAGCCCAGAGAGATTAAGTTAAAGTAATTCCAA
CAGAGCTAGCATGGATTAAAAAGTAAGGAAGGTCATTTTTGAATAACTTG
TCTGGTCATAATATACTGAATCCTAATGAAAGTAAAAATGTATTTTTCTT
TCTTTAAAACTGGAATAAAATTATACTGAATTATTATGAATGTTCAAAGT
CTTTCCTTCCTATAACCCAGAACTTAAACAAAAATCATCTTTTTCCATCA
CAAAATAGAAAAAAAAGGTGTCAAAAAGTTGACCACATTTTGACAGATTT
TTTTTTATTTCTCCATTCTAAAAATATACTGAACCTCTCTGTTATAGCTG
TTTCCCTTATATTGTAACAGTCATGATTATGTTTTATAGTTTTCATATCT
CTCCTTGTATTGTAAGCTGTTTTTCAATTTTTTTTCATTTAATTTTATTT
TATGTGCGCTAGCATTTTGCCTGTGGATATCTGTGTGAAGGTGTTGCACC
CCCTTTGAACTGGATTAACAGATAGTACTAAGCTCTCATGTGGGTGGCTA
AAGTTGAACTTGATCCCTCTGGAAGAGCTTCAGCCTATGCTCTTAACCTT
TGAGCCATCTCCTCCGGCCCCTTTGGTAAATTGTTAAACCTGTTTAAAAT
TTACCCTCCTCCCTTTAAAAAAGGTGCATATTTTTTTGTACTCCTTTTTC
TTGGTTTGGGAAATTTTTGTTTGGGGCCTCCCGGAAAATCTTTTTAGATG
TTCAAAATCCCCTGGTTATCCCTTTGGGTGGGTGATATTTTCTCCTTTAT
TTCCCGTTGTTTAATACTCTATTACAATCTTTCCTTCTTTCTAATAGTTC
TATATTTTTACTCGT

TTTTTTTTAGGAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCTTAATTGAGGAATACTGGATGGCTGAG
AAGCGTCTGAAACAAATGTTCAACATCCCCAATCATCAGGGGAATGAAAA
TCAAAACAATCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGAGAATGTGGAGAAAGAGGAAC
ATTCCTCCATTGTTGGTGGGATTGCAAACTTGTACAGCCACTCTGGAAAT
CAGTCTGGTGGTTCCTCAGAAAACTGGACATAGTACTACTGGAGGATGCC
GCAATACCTCTCCTTGGCATATATCCAGAAGATGTTCCAACTGCTAAGAA
AGAAACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAACCCAAA
ACTGGAAAGGACCCAGATGCCCCTCAACAGAGGAATGGATAAAAAGAAAT
GTGGCACATTAACACAATGGATTACTACTCAGCTATTAAAAGAATGAATT
TATGAAATTCCTAGAGAAATGGTTGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACCCAATCACAAAAGAACTCAAATGATATGTTCTCACTGATAAGT
GGACATTAGCCCAGAAACTTAGTATACCCAAGATATAAGATACAATTTGT
GAAACACATCGAAACTCAAGAAGAACGAAGATCAAAGTGTGGACACTTTG
CCTGTTCTTAGAATTTGGGAACAAAGCACCCATGGAAGGAGTTACAGAGA
CAAAGTTTGGAGCTGAGACAAAAGGATGGACCATCTAGAGATTGCCATAT
CCGGGGCACCATCCCATAATCAGCCTCCAAATGCTGACACCAGTAGCAAG
ATTTTGTTGGAAAGGACCTGAAATAGCTGTCTCTTGTGAGACTATGCCAG
GGTCCAACAAACCCAGACGTGGATGCTTACCGTCAGCTATGGAATGGATC
ACTGGGCCCCCATGGAAGGATCTAGAGAAAGTACCCCAGGAATCTACGCC
AATTTCCTTTATTGGTACATCAATATGCATTATACCGACACCCAAAGTTC
TGGTCTCTAGTGGCATATGATTCAAAAAAAGGGCCCATTCGACCCTCTCT
GTCAAAAAAGAGCCCTTGGGTTTCGGAACATTTATTTGTCCCACTACGGG
GATAGGGCTGGCCACAAAAGGAATTGGGTGTGTGAGTGTTATAACTTTCT
TCTTTTATTCTCTTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_e14.b1 MSMg01no048_e14.b1 CHROMAT_FILE:
MSMg01no048_e14.b1 PHD_FILE: MSMg01no048_e14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:03 2005
         (747 letters)



>mm_chr6_75588367_75589512
          Length = 1146

 Score = 1245 bits (644), Expect = 0.0
 Identities = 732/786 (93%), Gaps = 43/786 (5%)
 Strand = Plus / Minus

                                                                        
Query: 2    aggcagatgtgtcttacatgacaatgtgcaagccttcacttagtgcacaaagaag----- 56
            |||||||||||||||||||||||||| |||||| ||||||||||||| |||||||     
Sbjct: 1062 aggcagatgtgtcttacatgacaatgggcaagcattcacttagtgcagaaagaagcatta 1003

                                                                        
Query: 57   -------------cattattattattatta--------------------attattgata 83
                         |||||||||||||||||                    ||||||||||
Sbjct: 1002 ttattatcattatcattattattattattattattattattattattattattattgata 943

                                                                        
Query: 84   gttctaagtacaaaccacagaaagatagagtactgggagactaagaactttctgtgtaac 143
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 942  gttctaagtacaaaccacagaaagatagagtactgggagactaaggactttctgtgtaac 883

                                                                        
Query: 144  tttgcagacctcatgtcaaagtagagaatggaacagaataaaaggctctatgtatgtccc 203
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 882  tttgcagacctcatgtcaaagtagagaatggaacagaatcaaaggctctatgtatgtccc 823

                                                                        
Query: 204  agcagtgaaaactgtgaacaaaataattgtgttggaggctgaaaagattttttttttcct 263
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 822  agcagtgaaaactgtgaacaaaataattgtgttggaggctgaaaaga-tttttttttcct 764

                                                                        
Query: 264  gagaaagaaatctagcttcctcaacaattaatatttatgcacaaagattttattcatctg 323
            |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 763  gagaaagaaatctaccttccttaacaattaatatttatgcacaaagattttattcatctg 704

                                                                        
Query: 324  tagatgctcaaaaacatcagcccagagagattaagttaaagtaattccaacagagctagc 383
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 703  tagatgctcaaaaacatcagcccagagagattaagttaaagtaattccaacagagctagc 644

                                                                        
Query: 384  atggattaaaaagtaaggaaggtcatttttgaataacttgtctggtcataatatactgaa 443
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 643  atggattaaaaagtaaggaaggtcatttttgaataacttgtctggtcataatatactgaa 584

                                                                        
Query: 444  tcctaatgaaagtaaaaatgtatttttctttctttaaaactggaataaaattatactgaa 503
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 583  tcctaatgaaagtaaaaatgtatttttctttctttaaaactggaataaaattatactgaa 524

                                                                        
Query: 504  ttattatgaatgttcaaagtctttccttcctataacccagaacttaaacaaaaatcatct 563
            ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 523  ttattatgaatgttcaaagtccttccttcctataacccagaacttaaacaaaaatcatct 464

                                                                        
Query: 564  ttttccatcacaaaatag-aaaaaaaaggtgtcaaaaagttgaccacattttgacaga-t 621
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 463  ttttccatcacaaaatagaaaaaaaaaggtgtcaaaaagttgaccacattttgacagatt 404

                                                                        
Query: 622  ttttttttatttctccattctaaaaatatactgaacctctctgttatagctgtttccctt 681
            |||||||||||||||||||||||||||||||||||  | ||||||||| |||||||||||
Sbjct: 403  ttttttttatttctccattctaaaaatatactgaa--tttctgttatatctgtttccctt 346

                                                                        
Query: 682  atattgtaacagtcatgattatgttttatagttttcatatctctccttgtattgtaagct 741
            ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345  atattgtaatagtcatgattatgttttatagttttcatatctctccttgtattgtaagct 286

                  
Query: 742  gttttt 747
            ||||||
Sbjct: 285  gttttt 280


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 747
Length of database: 1146
Length adjustment: 10
Effective length of query: 737
Effective length of database: 1136
Effective search space:   837232
Effective search space used:   837232
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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