BAC Information

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BAC

Clone NameMSMg01-048J09
Chromosome6 (Build37)
Map Location 129,828,191 - 129,828,881
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667706, Clec2i, Clec2g, LOC667715, BC064078, Clec2f, Klrb1f, Clec2e, Klrb1-ps1, Clec2d, Cd69, 4922502D21Rik, Clec12a, 4933425B16Rik, Clec1b, Clec9a, Clec1a, Clec7a, Olr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17
Downstream geneKlra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473, LOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048J09.T7 (MSMg01no048_j09.b1)MSMg01-048J09.TJ (MSMg01no048_j09.g1)
ACCAG278316AG278317
length1,2791,264
length of high quality
(start - end)
631 (117 - 747)692 (82 - 773)
definitionCHROMAT_FILE: MSMg01no048_j09.b1 PHD_FILE: MSMg01no048_j09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:42 2005CHROMAT_FILE: MSMg01no048_j09.g1 PHD_FILE: MSMg01no048_j09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:09:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NTTACATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCAACAGAGGAATATGCCTTTAAAGACCAGCACTTAAGTAAATGTTCAAA
GTCCTTACCCTTCAGTAAAATGGAAATCAAAACAACTCTGAGGTTCCATC
TTAGATCTTTCAGAATTTCTAAGATCAAAAACTTGAGTGATAGCATGTGC
TAGAGAAGACTGGTAGCAAAGGGAACACTTCCATTGCTGGTGGGAGTAAA
ACCGTGTACAACCACTTTGGAGATCAATTTGGTCATTTTTCAGAAAACTG
GGAATAGTTCTATCTCAAGACCCAATTATATTACTTCAGGGCATGTACCT
AAAAGATGCTTTATCATCCCACAAAGATGCCTACTCAACTATGTTCCTAG
TATCTGTATTTGTAATAGTCAGAAACTGGAAATAACCTAGATGCCTCTCA
ACTGAAGAATGGATAAAAATGTGGTAAATCTACACAATGGAATACTATTC
AGCTATTATAAACAAAGGTATAATGAATTTGGCAGGCAAATGAATGCAAC
TTGAGGATCTCATCCTGAGTGAGGTAACTGAGTCTCACAAGGACATGCAC
AGTATGTATTCACTTATAAGTGGATATTAGTCATAAAATAGAGGATGTCT
GTACTATATTCCACAGAACAGGAAAGAGTCTCACTTGGAAGGGGGAATGG
AATGGTCATGGAAGTCAGATGGAGGGAGGAAACTGGGTGAGAGAGGGGGC
ATTGTTACTTTTTTTTTTTNTTTTTCTTTTTTCTTTTTCACTTCTTTCTT
TTCTTTTTCTTTATTTTTTTCTTTTTTTACTTTTATATCTATATATTTCT
TTTTTTCTTTTTTCTTTTTTTTCTTTTTTTTCTCTTTTTTCTTTTTTTTT
TTTTTATTTTTTCCTTTTCTTTATTTTTTTATTCTTTTTTTTTTTTTTTT
TTATTCTTTATATTTTTTCTTNTTTTTTTCTTCTTCTTTTCTTCTATCTT
TTATTATTTTTCCTTTTCTATACTATTTTTTCTTTTTCTTCTTTTTCTTC
TCTTTTTTCTATCTTCTTTTCTATTTATCTTTATTTCTTTCCTTTTCTTT
ATTTGTTTCTTTTTTTCTTTTTATTTTTTTCCTTTTTTTCTTTTTTATTT
TCTTTTTCTTACTTTGTAGTTTTCTTATTCTTTTTATTCTACCTTCCTTC
CTATTTTCTTTTCATTCTTCTCCTTTTATATCTTCTCTTCTTTCTATTTA
TTTGCTTTATCTTTTATCTCTATATATTA
NNNTTTATGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTAAACTCACATATGTGACCAACATTCATA
AAAGAAAAACCGTCCCATCTCATCTCTAAAATATTCAATTTTGAATATTT
TCATGCCAACTAATAGTTAAGTTAGTTAGTTGTCATGTAGTAATCTATAT
TAGAGTTCCTAAAATGTATATTCCTTTGAATCCAGTGACTTCATTCCTAA
AATATCTTTGTTAGTGTGTTCTAAAGTATATTCCATGAATTTTGTAAGCT
GACAACAATAAAATACTATAAAACAACCTGAACGTTCAGCAGCAGAGAAT
TATCTAATTAATTTATGTTGTATATAAGTGATTAATTGATATATATGGCT
TTAAATATCTTGAGATCTAGATATATAAAATGAAGAAATTCTCATTATTG
ATTAGAAAAATTACTATGACAAAAATGGAGTATATTGGTGTAGTGGTATA
CAGCTATAAATCTAAGACAGAAAAGAGTGAGTCCAGAGAATTGTGAGTAT
ATGGTGAATCTATGCCACAGGTAAGATGCAACAACTATCTCAGATAACCG
CAACTAAAATCAAATCATAATAAAATACCTGAACAAAACAAAATCAAGTC
CTTTGCTCAGTGGAAGATATTTTCTGAGAATGCTCATTGTCTTAGATTCA
ATACTGCAGCACCATGAAAACATCAGCAGTAAACTCACTCCACATATAAT
AACATCAGGACAAAACAGGATTGATATTATCTGAAATGCCCTACAAAGGG
CAGAAAAAAACCTAAAGAGACCATATCCAGGTTAGTTAAGGCTACTGTTT
AAGGGCGGGGGCCAAAAACACATGTCAAAAATTATAACACAGAATTGCTC
CTGTCTAAACAAAATGCCGGGACAAAGAGTAACAGAGAGACTGAAGGAAA
GGCTTCCCAGAGACTGTCTCATCTAGGTAGGTAACATTGCTATTTTCAGC
CACTAATCCCAGACACTATTGTTGATGCCAAGAAATGTTTGTTGAAAGGA
ACCCTGGATATACTGTCTCCCTGGAAGGTTTTATCAAAATCCGGAACAAA
TATTAAGGGTGTAAGCTGGGAACCCCACACCCTTTTCCCGAATTGGGGAC
CCCCTGTGGGGGATGGTAGGATAAAAACCTGTGTAAAAAATTAAGAGATT
TTGTTCCCCCTTTGTGTAAGAAACATAATCTTTTTACCCTCCCACTTTCC
CCTCAAAGTTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_j09.g1 MSMg01no048_j09.g1 CHROMAT_FILE:
MSMg01no048_j09.g1 PHD_FILE: MSMg01no048_j09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:09:42 2005
         (692 letters)



>mm_chr6_129827991_129829081
          Length = 1091

 Score = 1292 bits (668), Expect = 0.0
 Identities = 686/692 (99%), Gaps = 1/692 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtgaccaacattcataaaagaaaaaccgtcccatctcatctctaaaatattcaattt 60
           ||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||
Sbjct: 891 tatgtgaccaacattcataaaagaaaaattgccccatctcatctctaaaatattcaattt 832

                                                                       
Query: 61  tgaatattttcatgccaactaatagttaagttagttagttgtcatgtagtaatctatatt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 831 tgaatattttcatgccaactgatagttaagttagttagttgtcatgtagtaatctatatt 772

                                                                       
Query: 121 agagttcctaaaatgtatattcctttgaatccagtgacttcattcctaaaatatctttgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 agagttcctaaaatgtatattcctttgaatccagtgacttcattcctaaaatatctttgt 712

                                                                       
Query: 181 tagtgtgttctaaagtatattccatgaattttgtaagctgacaacaataaaatactataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tagtgtgttctaaagtatattccatgaattttgtaagctgacaacaataaaatactataa 652

                                                                       
Query: 241 aacaacctgaacgttcagcagcagagaattatctaattaatttatgttgtatataagtga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 aacaacctgaacgttcagcagcagagaattatctaattaatttatgttgtatataagtga 592

                                                                       
Query: 301 ttaattgatatatatggctttaaatatcttgagatctagatatataaaatgaagaaattc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 ttaattgatatatatggctttaaatatcttgagatctagatatataaaatgaagaaattc 532

                                                                       
Query: 361 tcattattgattagaaaaattactatgacaaaaatggagtatattggtgtagtggtatac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tcattattgattagaaaaattactatgacaaaaatggagtatattggtgtagtggtatac 472

                                                                       
Query: 421 agctataaatctaagacagaaaagagtgagtccagagaattgtgagtatatggtgaatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 agctataaatctaagacagaaaagagtgagtccagagaattgtgagtatatggtgaatct 412

                                                                       
Query: 481 atgccacaggtaagatgcaacaactatctcagataaccgcaactaaaatcaaatcataat 540
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 411 atgccacaggtaagatgcaacaactatctcagataacagcaactaaaatcaaatcataat 352

                                                                       
Query: 541 aaaatacctgaacaaaacaaaatcaagtcctttgctcagtggaagatattttctgagaat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aaaatacctgaacaaaacaaaatcaagtcctttgctcagtggaagatattttctgagaat 292

                                                                       
Query: 601 gctcattgtcttagattcaatactgcagcaccatgaaaacatcagcagtaaactcactcc 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 291 gctcattgtcttagattcaatactgcagcaccatgaaaacatcagcagtaaa-tcactcc 233

                                           
Query: 661 acatataataacatcaggacaaaacaggattg 692
           ||||||||||||||||||||||||||||||||
Sbjct: 232 acatataataacatcaggacaaaacaggattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1091
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1081
Effective search space:   737242
Effective search space used:   737242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)