BAC Information

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BAC

Clone NameMSMg01-048P14
Chromosome6 (Build37)
Map Location 45,228,512 - 45,229,171
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-048P14.T7 (MSMg01no048_p14.b1)MSMg01-048P14.TJ (MSMg01no048_p14.g1)
ACCAG278593AG278594
length1,2291,203
length of high quality
(start - end)		840 (40 - 879)671 (79 - 749)
definitionCHROMAT_FILE: MSMg01no048_p14.b1 PHD_FILE: MSMg01no048_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:29 2005CHROMAT_FILE: MSMg01no048_p14.g1 PHD_FILE: MSMg01no048_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGAATAATNNNNNNAATCAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCAAGGCCCATACATAAACCTGTTAAAAGCAATCTACAGC
AAACCAGTAGCCAACATCAAAGTAAATGGTGAGAACCTGGAAGCAATCCC
ACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTCTCTCTACCTATTCA
ACATAGTACTTGAAGTCCTAGCCAGAGCAATTCGACAACAAAAGGAGATC
AAGGGGATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGA
TGATATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGATCTCC
TAAGCCTGATAAACAGCTTCTGTGAAGTAGCTGGATATAAAATTAACTCA
AACAAGTCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGA
AACTAGGGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACC
TTGGCATGACGCTAACTAAGGAAGTAAAGATCTGTATGATAAGAACTTCA
AGTCTCTGAAGAAAGAAATTAAAGAAGATCACAGGTGATGGAAAGATCTC
CCATGCTCATGGATTGGCAGGATCAATATAGTAAAAATGGCTATCTTGCC
AAATGTAATCTACAGATTCAATGCAATCCCCAACAAAATTCCAACTCAAT
TCTTCAACAAATTACAAAGGGCAATCTGCAAATTCATCAGGAATAACAAA
AAATCTAGGATAGCAAAAATTCTTCTCAAGGATAAAAGAACCTCTGGTGG
AATCACCATGCCTGACCTAAAGCTGTACTATAGAGCAATTGTGATAAAAA
CTGCATGGTACTGGTATAGCGACAGACAAGTAGACCAATGGAATAGAATT
TGAGACCCAGAAGTGAACCCACCCACCTATGCTCATTTGAACTTTGACCA
GGGAGCAAAAACCATCCGTGGAAAAAAGACCGCATTTTCACCAATGTTGC
CGGCACCAACTGCCGCTTATCATGTAAAAAAAGGGAATTGATCCCTTCCA
ATCCCCTGGTACAAAGGCCCAAACTAAGGGGATTATGGAACTCTCCCTTA
ATACCCCAAAACCTGGAATTTTTTAAGGAAAAAAGTAGGGAAAAATCTCC
TAAAATTTGTGTCCAGGGAAAAAATCTTGATAATAAACACCTAGGTGTTT
GGGCTTTTAAATAAAAAATCACACATGGG

NNAAAATTATTTNNNAAAAGATGGNAGGCTGGGGCGCCXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTTATGGTATATAAATGAA
ATGTTGCCATTAATGGTGCCTATAGCAAAGGGCGCGCTATTTCATATTGT
CATCTTCTCATAAACATCAAGCGAGTCTGATCCAAAGGAATAATTTTAAA
GGGGGATGATTGATTGATGATAAATAGATGATAGATTGATAAATATATTA
TAGGCGATAGATACATAATACATAAATAATAGATATATGCATATAAATAA
TATTTAGATGATATGTGATATATAGGTGATGCACACATATACACATGCAT
ACAGTTATAATAATAAGTAACATAAATGATAGATACATAATAATATGGAA
GATAGAATTATAGGAAGTAGATAAATAATGGGTTAGTCACTGATAGGGAC
AGAGCACATGGTGTTAAAAAGCAGAGTGCTGTGGCACTGAATTTTACTAC
ATAGATATTATCTTAATTTCTGTAACAATAAGTATAACTGAAAATTATGC
ATAGAAAAACTTAATCATACCATAAATTTGTAATTTATGTTTTTTTTAAA
TTTTGCAAATAAATTACTTCATTTATTATTTTTTAGTGCACATCCAAAAG
TAATACTCTAATGTTCGTAAGATTTAAGCTAATGAATAAAAAACATTTCT
AGGCATGATATGTCACTCATAATCCATAAGCAAGGACTTCAAGATCATGT
TTCTCTTTGGACAACACTAACTAAAATCAAAAGTACAAACAACATTATCA
TCTCATAGAAAATTCATTTACAAAAGGCCTGTGTGACCTAAGATGACTGG
TCCCAGGAGACCAAGGGATTAGGATTGCGCTCAAAATCCGTTTCTCCTGT
TTTTGTGGTTTTATCTTACCCTTCCATTCCAGAATCTGCCTGTCCCGGTG
GAATTGTTATCCTTTATTTATCGCCAATTCTGGACCCCGATTTACCTTCT
TTTCCACTTTGCCTGAAAGAAAGAATCTTTAAATATATTTTGTCCTAAAA
ATTTGTTTTTTTCTAAAAGAAAACTTTTAGGTATTTTATACTTTTTTATC
TAACTCCTTCTTTGTAAATAAAATTTATATTTCCTTAAACTCCCCCTCCT
ATATTCTATGACTTAAATCATCTTCTTTTTTTTTCTATTTAATTTTTCTT
ATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no048_p14.g1 MSMg01no048_p14.g1 CHROMAT_FILE:
MSMg01no048_p14.g1 PHD_FILE: MSMg01no048_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:30 2005
         (671 letters)



>mm_chr6_45228303_45229373
          Length = 1071

 Score = 1145 bits (592), Expect = 0.0
 Identities = 644/662 (97%), Gaps = 2/662 (0%)
 Strand = Plus / Plus

                                                                       
Query: 10  gtatataaatgaaatgttgccattaatggtgcctatagcaaagggcgcgctatttcatat 69
           ||||||||||| ||||||||||||||||||||||||||||||||||  | ||||||||||
Sbjct: 210 gtatataaatggaatgttgccattaatggtgcctatagcaaagggcatgttatttcatat 269

                                                                       
Query: 70  tgtcatcttctcataaacatcaagcgagtctgatccaaaggaataattttaaagggggat 129
           ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 270 tgtcatcttctcataaacatcaagcaagtctgatccaaaggaataagtttaaagggggat 329

                                                                       
Query: 130 gattgattgatgataaatagatgatagattgataaatatattataggcgatagatacata 189
           | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 330 ggttgattgatgataaatagatgatagattgataaatatattataggtgatagatacata 389

                                                                       
Query: 190 atacataaataatagatatatgcatataaataatatttagatgatatgtgatatataggt 249
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 390 atacataaataatagatatatgcatataaataatatttagatgatatgtgatgtataggt 449

                                                                       
Query: 250 gatgcacacatatacacatgcatacagttataataataagtaacataaatgatagataca 309
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 450 gatgcacacatatacacatgcatacagttataataataaataacataaatgatagataca 509

                                                                       
Query: 310 taataatatggaagatagaattataggaagtagataaataatgggttagtcactgatagg 369
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 taataatatggaagatagaattataggaagtagataaataatgggttagtcactgatagg 569

                                                                       
Query: 370 gacagagcacatggtgttaaaaagcagagtgctgtggcactgaattttactacatagata 429
           |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 570 gacagaacacatggtgttaaaaagcagagtgttgtggcactgaattttactacatagata 629

                                                                       
Query: 430 ttatcttaatttctgtaacaataagtataactgaaaattatgcatagaaaaacttaatca 489
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttattttaatttctgtaacaataagtataactgaaaattatgcatagaaaaacttaatca 689

                                                                       
Query: 490 taccataaatttgtaatttatgttttttttaaattttgcaaataaattacttcatttatt 549
           |||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||
Sbjct: 690 taccataaatttgtaatttatgttttttt--aattttgcaaataaattacttcatttatt 747

                                                                       
Query: 550 attttttagtgcacatccaaaagtaatactctaatgttcgtaagatttaagctaatgaat 609
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 748 attttttagtgcacatccaaaagtaatactctaatgttcataagatttaagctaatgaat 807

                                                                       
Query: 610 aaaaaacatttctaggcatgatatgtcactcataatccataagcaaggacttcaagatca 669
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 808 aaaaaacatttctaggcatgatacatcactcataatccataagcaaggacttcaagatca 867

             
Query: 670 tg 671
           ||
Sbjct: 868 tg 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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