Query= MSMg01no050_b06.b1 MSMg01no050_b06.b1 CHROMAT_FILE:
MSMg01no050_b06.b1 PHD_FILE: MSMg01no050_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:54 2005
(412 letters)
>mm_chr6_102500910_102501721
Length = 812
Score = 731 bits (378), Expect = 0.0
Identities = 393/398 (98%), Gaps = 2/398 (0%)
Strand = Plus / Plus
Query: 16 gaattcatataggtagattgtgatctgtccgtcctataatccttgtacttttgctgggtg 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaattcatataggtagattgtgatctgtccgtcctataatccttgtacttttgctgggtg 275
Query: 76 taagacatagtcgagaatgtagcagaggctttaattcctagaagatctaggtacaatggc 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 taagacatagtcgagaatgtagcagaggctttaattcctagaagatctaggtacaatggc 335
Query: 136 acatgtccatattgcca-ctcatacgggagctaaaggctagaggttcctgaatttaagat 194
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
Sbjct: 336 acatgtccatattgccagc-catacgggagctaaaggctagaggttcctgaatttaaggt 394
Query: 195 tagcccaagcatcatagtgaggtttgatgtttcttagtatgttttcattgaaagagaatt 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 tagcccaagcatcatagtgaggtttgatgtttcttagtatgttttcattgaaagagaatt 454
Query: 255 gcaccactttcttcccttcttctcctccctccagcccctcccagctgctctccctttttc 314
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct: 455 gcaccactttcttcccttcttttcctccctccaacccctcccagctgctctccctttttc 514
Query: 315 cactctcatgcccgactccactctttttaattaagtcataaaactgaggtgccagtaatt 374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cactctcatgcccgactccactctttttaattaagtcataaaactgaggtgccagtaatt 574
Query: 375 agcatattagctttctctagtaaaaattctgccatgag 412
||||||||||||||||||||||||||||||||||||||
Sbjct: 575 agcatattagctttctctagtaaaaattctgccatgag 612
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 812
Length adjustment: 9
Effective length of query: 403
Effective length of database: 803
Effective search space: 323609
Effective search space used: 323609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no050_b06.g1 MSMg01no050_b06.g1 CHROMAT_FILE:
MSMg01no050_b06.g1 PHD_FILE: MSMg01no050_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:47:54 2005
(380 letters)
>mm_chr6_102700849_102701629
Length = 781
Score = 480 bits (248), Expect = e-140
Identities = 312/342 (91%), Gaps = 18/342 (5%)
Strand = Plus / Minus
Query: 1 agctaaaatctcaaatccccaataaaagaatggagcatgcaaaaagcaagcaaatgttga 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 340 agctaaaatctcaaatccccaataaaagaatggagcatggaaaaagcaagcaaatgttga 281
Query: 61 agcagtgttatatattgcaaagaggaatggagaaaaggatcagtaagcac-agctctctt 119
||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 280 agcagtgatatatattgcaaagaggaatggagaaaaggatcagtaagcacaagctttctt 221
Query: 120 aaagatacttcctggtaattcaaggttttgataattatcctgagcttcttcaaacttaaa 179
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 aaagatacttcctgataattcaaggttttgataattatcctgagcttcttcaaacttaaa 161
Query: 180 gcactccttctgcctcagactcctgagtgctcagatttcgggcctgatccaacatgtctg 239
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 160 gcactccttctgcctcagactcctgagtgctcagatttcaggcatgatccaacatgtctg 101
Query: 240 gctcagttactcttatctttattcatttagccgtcagacctttacgtaccagttacaaaa 299
||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct: 100 gctcagttactcttatcgttattcatttagccgtcag--------gtac-------aaaa 56
Query: 300 agaacagaaaagaaaagaaaagaaaa-gaaaagaaaaggaaa 340
| || | |||||||||||||| |||| |||| ||||| ||||
Sbjct: 55 acaaaataaaagaaaagaaaaaaaaaagaaa-gaaaaagaaa 15
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 781
Length adjustment: 9
Effective length of query: 371
Effective length of database: 772
Effective search space: 286412
Effective search space used: 286412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
