BAC Information

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BAC

Clone NameMSMg01-050D04
Chromosome6 (Build37)
Map Location 67,729,165 - 67,729,504
singlet/doubletsinglet
Overlap geneIgk
Upstream geneEG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056
Downstream geneEG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025, Igkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050D04.T7 (MSMg01no050_d04.b1)MSMg01-050D04.TJ (MSMg01no050_d04.g1)
ACCAG279357AG279358
length1,2201,321
length of high quality
(start - end)
410 (30 - 439)364 (81 - 444)
definitionCHROMAT_FILE: MSMg01no050_d04.b1 PHD_FILE: MSMg01no050_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:10 2005CHROMAT_FILE: MSMg01no050_d04.g1 PHD_FILE: MSMg01no050_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:48:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAACACTGCTCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TCAACTGACTAATCAAGAACACCCTAGAAGCACCTGAAGAAATGTTTAAC
ATTCTTAGCCATCAGGGAAATGCAAATCAAAATGACCCTGAGCATCCACC
TCATACCAGTCAGAATGGCTAAGATCAAAAAGTCCAGATTGTCCCTCTTC
TTTGCCTGTTTGCCTTGTAGGACTGAGCAACTGCTAGATCCTTGCACTTC
CATTCACAGCTGTTGATGACCATTGTTAGGATTCGGACTACAGACTATAT
AAATGAATGTGAAGCTGAACCTTGCAGAAATGGTAAAATATGTACAGACC
TTGATGTTAACTACTCCTCTGAATGCCCAACAGAACTTATGGGATGAAAT
TATCAATATTAATGCTCTGGTGCATTGGGAATCGAACGAGGGATCACATC
TATTTCTTCTACCACGGCTTCGTTTACCCACTGAGCTCTTATCAGACTCA
ATAAATGGTATCCCTACTATGCCTGCCTTAATAAGACTAGCCTTATAAAT
GCCTGGACAGCTGCTACAAATGACAGATGGCTGTGGATTCAGATAAATTT
GCAAAGAAAAATGAGACCCACTGGTGTTATTACCCAAGGAACAAAGGGAT
TGGAAATAAAGAATACATAAAATCCTACAAACCTGCCTACAGCAATGACG
GGAAGACCCGGGTAATATGCAAAGTAAAAGGCACCAATAAAGACATGTGT
TAATAACAAGACACCCTATGCTACTTCTTTGACACCCCCAATCAAAGTAT
AGTACATAAAACTACCCCAAAATTTGTCAATGGCACTGTACTTTAAGAAT
CCAACTTCTTGGCTGTGAGCCTTCAGGCTGTTTGGAATCTTTGGGTGTGC
AATCCTGACCAATAAAAGACTACCCCCTGCTCCTTTCCTCCGTGCCCTTC
GAACCCCTCCACGTGAACATGTTTACTTGGCCAACCAAGGAAAAGCAAGC
CTTCCCCAAACCAAGNCAAATTAAATGTCCTGGACCTTCCACCCCCCCAG
TCACCAATGGGTTAACGGGTTTGTATCCTTACTCCCCTCCCAAAAGTGAA
CTCGGCTTCCTTTTCCCCCCAGGGAACCTAAATCCTTTCTCCGGCCACTC
ACCCACGTTGGTTAATATCCATACAAAACATATCTCCTTCCATCAGACTT
CATAATAACAAACCTCTGTC
TTTTTTCCACGTGAGCATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTCTTTGTTTACTTCTATTCCCCATTTTTTTTT
TTTGATAGGCTTATTTGGCTCTCTGGAGGAGTAACCAGTCTGAGTCCTTT
TATGGGGGAATAAAGTCATTGATGCTAAGAGATATTAAGGAGTGGTGATT
GTTGCTACCAGTTGTTTTTGTTGATAGAGTTGGAATTGTGTTTGTGAGGC
TAACTTTTTTTTGGGTTTGTTGAAAGAAGATTACTTTCTTGCTTTTTCTA
GCGCGGAGTTTCCCTTCTTGCGTTGGAGTTTCCCATCTTTTACCTGTTGC
AGGGCTGTATTTGTGGAGAGATAGTATGTAAATTTGGCTTTTATCATGGA
GTATCTTGGTTCCTCCATCTATGATAATTGAGAGTTTTGCTGGCTACAGT
AGCCTGCGCTGGCATTGTTGTCCTCTTAGGGTTTGTATGACATTGGCCCC
ACATCTTCTAGTTTTCACAGTTTGCTGAGAAGCCTGCTGCAATTCTGATA
GGCCTGCCTTTATACGTTTCTTGACCTTGTTCCCTTACTGCTTTCAATAT
TCTTTCCTTGTTTTGTGCCTTGTTTGTGTCTTGACTCCTTAATGCACTGA
GCACCTTTCTTCCTGGTTCATTCTATTTGTAGTCCTCTATACTTCTTTTC
CGCTCCTTGTTTGCTCCTCCTCTTTTATCTTATGTCAAATCCTCTTTCTA
TTTCGCTCATTTCTCCTTATCCTCCCGCTCTTCCCTTTTCTTTCAATATT
TCCTTCCTTCCTTTTTTTTTTATTCTTTCTTATGTCTCTTTCCTCCTTTT
ATTGTATTTTTTGTTTCTTTTCCGCTTCTGCTTTTTTCTCCCTTTTATTT
CCCTCTCCTATCTCTTATTCCTCTTCTCTCTCCTTCTTGTTCTCCTTCTA
TTTTATTTCTCACTCTCTCTCTCCTCTTTTCTCCCTTTTTTCTTTCACTT
TTCTCTTATCTCCTCTCCTTCTCTCTCCTCCCCTTCTCCTCTTTTCTCTC
TTCTTCTTCCTTCCCTAACTCTCTTTATCTATTAACTCTTTCTCTCCTTG
TTTCTTATACCTTTCCCTCTCTACATATTCTCAATATTCTTTTTTTCTCT
TCTCTTTTTCTCATCTTATCTTGATTTCGCTCTTCCTTACTTCTCCTTTC
CATCTCTTTCCTCCTCTTCTTCTCATCTCTCCACTTTATCCTTCCTATCT
CTACTCTTATCCTTCTTCTTTCACTCTACTCCCCTCCTGTNNATNTATAT
ATTATATTATTTCGTATCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_d04.b1 MSMg01no050_d04.b1 CHROMAT_FILE:
MSMg01no050_d04.b1 PHD_FILE: MSMg01no050_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:48:10 2005
         (410 letters)



>mm_chr6_67728695_67729504
          Length = 810

 Score =  588 bits (304), Expect = e-172
 Identities = 331/340 (97%)
 Strand = Plus / Minus

                                                                       
Query: 68  taacattcttagccatcagggaaatgcaaatcaaaatgaccctgagcatccacctcatac 127
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 810 taacatccttagtcatcagggaaatgcaaatcaaaatgaccctgagcatccacctcacac 751

                                                                       
Query: 128 cagtcagaatggctaagatcaaaaagtccagattgtccctcttctttgcctgtttgcctt 187
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 750 cagtcagaatggctaagatcaaaaagtcaagattgtccctcttctttgcctgtttgcctt 691

                                                                       
Query: 188 gtaggactgagcaactgctagatccttgcacttccattcacagctgttgatgaccattgt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 gtaggactgagcaactgctagatccttgcacttccattcacagctgttgatgaccattgt 631

                                                                       
Query: 248 taggattcggactacagactatataaatgaatgtgaagctgaaccttgcagaaatggtaa 307
           ||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 630 taggattcggactacaggctatataaatgaatgtgaagctgagccttgcagaaatggtaa 571

                                                                       
Query: 308 aatatgtacagaccttgatgttaactactcctctgaatgcccaacagaacttatgggatg 367
           ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 570 aatgtgtacagtccttgatgttaactactcctctgaatgcccaagagaacttatgggatg 511

                                                   
Query: 368 aaattatcaatattaatgctctggtgcattgggaatcgaa 407
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 aaattatcaatattaatgctctggtgcattgggaatcgaa 471


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 410
Length of database: 810
Length adjustment: 9
Effective length of query: 401
Effective length of database: 801
Effective search space:   321201
Effective search space used:   321201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)