BAC Information

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BAC

Clone NameMSMg01-050O19
Chromosome6 (Build37)
Map Location 141,032,048 - 141,219,040
singlet/doubletdoublet
Overlap geneLOC664875, Pde3a
Upstream geneLOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868
Downstream geneSlco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-050O19.T7 (MSMg01no050_o19.b1)MSMg01-050O19.TJ (MSMg01no050_o19.g1)
ACCAG279852AG279853
length1,1321,120
length of high quality
(start - end)		754 (52 - 805)754 (79 - 832)
definitionCHROMAT_FILE: MSMg01no050_o19.b1 PHD_FILE: MSMg01no050_o19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:52 2005CHROMAT_FILE: MSMg01no050_o19.g1 PHD_FILE: MSMg01no050_o19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:49:53 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(141,032,048 - 141,032,797)(141,218,431 - 141,219,040)
sequence
NCCTTTTNTNNNNTATCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATTTCACTTTAATCAGCACCATTAGATTAAAGAAATAGA
ATGTTGAGAGTTGGCTCCACTGCCCATTTCTAATCACTCAAATACTGCAG
TTTTGCCTGCAGGCAACCAGGACATGTCTTACCTTAATGAGATTAAGAGT
GGTGCTTAGCCTGGCATCCTCTTTTAACTGTCACACAAGGGGACAGCAAA
GACACCCCCTCTCTTAGCGCTGCTTGACACAAGTTTCTCTTGCATGAATG
CAGACTGTGTTATATGACTCCCAGTATAGCACCCAGCCACAGTTTGAAAA
ATGCTTTTATTTCTAGGTATTAGAAGCAGCCTTTATCAAGGAGTGTTTCC
CCTTTTGACCAGCCTTCTCAGGACTTTCCTAGGAATATCTCGTCTGCAAA
TCCTACCATGCTGTGGGCTCCTGAGAGAAGATTGTCATGTTCCCTGCCTT
GGTCTTGATGAGTCCTTTAAACTGTGGCCTCCTGACCGGTCATTCTTCTA
GAGAAAGTGAGCTCAGCTACTGAGTTGAGAAGATAAGTTTGCACCAAATA
CATCATGTCTTCAATTAACTGCAGTAAGCAATTCTAGGACATTTACTTAG
CCCCACTGGCTTCAAATATAGTAAAATCTGTGAGTTGAACCCCACTGGTG
GTGGTAGCTACAACTTTAAACAAAATGCAATCAGAATGTATTTAAGATGA
ATATCATCTGTTTCCAACTCTCTATCCTTTTGCTGATCTCTGTGGGTTTC
TTGTAAAATGAGAGGTTTAGAATACACAAGTCTTCAGGATTTGGAANTGA
TATGAATATTTTGTTACGTGGAAAGTGTTTAATGATTGACGGGAGATATA
GATCAGCAGTGGTTGCTGCTCGTGTAGAAAAACCAACTTGTGGAAACTAA
AATCAACCCTCTAACTTCAGCCCCTAATGAATATCCAGGGTTCCTCTTTG
GCCCTCTGGCCAATACCTCCTTCTTCAGGGCCCATAACCCCAGAACACAC
CTTGGCCCCTATATTTACACCCTGGGGCCCCCCCCCCCCCTTATAATTAC
CCCCCCCCTTTTCCCCCTTTTGTTTCCCCCCC

NCATTTATTTTNNTAAGAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCCAGGTGAGGGGAGGGAA
CGAGAAGGTGTAGAAATGCCAGGGGCAGAAATGTAGTACCTCTCACAGCA
AGGACTGGGCAGAGTAACCAAAATGTAGTACCTCTCACAGCAAGGACTGG
GCAGAGTAACAAAATACACTCATGAGAGAGCACAAACACTTGATGCTCTC
TTTAATTGCCATTCAAGGCTAAGACAGATCGTCAATGAAACTTTTCAGGA
AGCCAAACAAAATATATAGATAAACAAAATTTTACGATATGTAAGGTCAG
GTCAAGAGAAACACTGAGAGCAATGGAGAGTTGCCACGAGGGAAATGTCA
TTTGAACAAAGAACAGATATAGCATTGTGTTCAGAGAGCTGGCTAGTATT
GCTACTGATACAATGCTCACACCTATTTGTGCACATGTACACACACATAC
ACACACACACACACCCCACTCATAGCCTCACATACATATTTTAATAAGAC
AAACCAGAATAAGAATACCTAAAGAGAATAATTGAAATAGAATCTAATTG
ATAATTGTCTAAGGTTAATTTGAGGGGCTGCATAAACAAATTAACAAATT
AATTTATTCAATGGTCATATAGGCCAGCATTCAACTGTTCTAGATTAAGA
ACCTTGGTCATGTACTTTTCAAATATGATGAGCTTTATGGGGCTTACTTA
CAGTCCCATGGCAAAGCTTGAGGTCTATAATGACCCATCATCTCTCTCCT
TAGAAGACTCAATAACCCAGTATACATTCACCAAGATTTGGGATGCTGTA
GCATTTCATCTCAAATAGAGGACAGCTGCTTGTGGTTTGATGCTGCCATT
TTACTTTTGAAACAGAGTTATCATGTGTAGCCCAGGCTGGGCTCAAAGTT
TTTATGTAACTAAAGATGAGTTTGAACTCTGGGATCACCCCAGTTCTACT
TTCAAAAGGTTGAAATTAAATAATAACTGCCTAATAAAATGGCCAACTGT
CTTAGGAAAAACTTCTTCTATATCTACCTGGAAAGTTAACCCGAATTATT
TTTTGAAAGGGCTGCGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no050_o19.b1 MSMg01no050_o19.b1 CHROMAT_FILE:
MSMg01no050_o19.b1 PHD_FILE: MSMg01no050_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:52 2005
         (754 letters)



>mm_chr6_141031844_141032997
          Length = 1154

 Score = 1435 bits (742), Expect = 0.0
 Identities = 748/750 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatttcactttaatcagcaccattagattaaagaaatagaatgttgagagttggc 64
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatttcactttaatcagcaccaacagattaaagaaatagaatgttgagagttggc 264

                                                                       
Query: 65  tccactgcccatttctaatcactcaaatactgcagttttgcctgcaggcaaccaggacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccactgcccatttctaatcactcaaatactgcagttttgcctgcaggcaaccaggacat 324

                                                                       
Query: 125 gtcttaccttaatgagattaagagtggtgcttagcctggcatcctcttttaactgtcaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtcttaccttaatgagattaagagtggtgcttagcctggcatcctcttttaactgtcaca 384

                                                                       
Query: 185 caaggggacagcaaagacaccccctctcttagcgctgcttgacacaagtttctcttgcat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caaggggacagcaaagacaccccctctcttagcgctgcttgacacaagtttctcttgcat 444

                                                                       
Query: 245 gaatgcagactgtgttatatgactcccagtatagcacccagccacagtttgaaaaatgct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gaatgcagactgtgttatatgactcccagtatagcacccagccacagtttgaaaaatgct 504

                                                                       
Query: 305 tttatttctaggtattagaagcagcctttatcaaggagtgtttccccttttgaccagcct 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tttatttctaggtattagaagcagcctttatcaaggagtgtttccccttttgaccagcct 564

                                                                       
Query: 365 tctcaggactttcctaggaatatctcgtctgcaaatcctaccatgctgtgggctcctgag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tctcaggactttcctaggaatatctcgtctgcaaatcctaccatgctgtgggctcctgag 624

                                                                       
Query: 425 agaagattgtcatgttccctgccttggtcttgatgagtcctttaaactgtggcctcctga 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaagattgtcatgttccctgccttggtcttgatgagtcctttaaactgtggcctcctga 684

                                                                       
Query: 485 ccggtcattcttctagagaaagtgagctcagctactgagttgagaagataagtttgcacc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccggtcattcttctagagaaagtgagctcagctactgagttgagaagataagtttgcacc 744

                                                                       
Query: 545 aaatacatcatgtcttcaattaactgcagtaagcaattctaggacatttacttagcccca 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaatacatcatgtcttcaattaactgcagtaagcaattctaggacatttacttagcccca 804

                                                                       
Query: 605 ctggcttcaaatatagtaaaatctgtgagttgaaccccactggtggtggtagctacaact 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctggcttcaaatatagtaaaatctgtgagttgaaccccactggtggtggtagctacaact 864

                                                                       
Query: 665 ttaaacaaaatgcaatcagaatgtatttaagatgaatatcatctgtttccaactctctat 724
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ttaaacaaaatgcaatcagaatgtatttaagatgaatatcatctgtttccaactctctat 924

                                         
Query: 725 ccttttgctgatctctgtgggtttcttgta 754
           ||||||||||||||||||||||||||||||
Sbjct: 925 ccttttgctgatctctgtgggtttcttgta 954


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 754
Length of database: 1154
Length adjustment: 10
Effective length of query: 744
Effective length of database: 1144
Effective search space:   851136
Effective search space used:   851136
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no050_o19.g1 MSMg01no050_o19.g1 CHROMAT_FILE:
MSMg01no050_o19.g1 PHD_FILE: MSMg01no050_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:49:53 2005
         (754 letters)



>mm_chr6_141218431_141219584
          Length = 1154

 Score = 1180 bits (610), Expect = 0.0
 Identities = 610/610 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgccaggtgaggggagggaacgagaaggtgtagaaatgccaggggcagaaatgtagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 tttgccaggtgaggggagggaacgagaaggtgtagaaatgccaggggcagaaatgtagta 551

                                                                       
Query: 61  cctctcacagcaaggactgggcagagtaaccaaaatgtagtacctctcacagcaaggact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 cctctcacagcaaggactgggcagagtaaccaaaatgtagtacctctcacagcaaggact 491

                                                                       
Query: 121 gggcagagtaacaaaatacactcatgagagagcacaaacacttgatgctctctttaattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gggcagagtaacaaaatacactcatgagagagcacaaacacttgatgctctctttaattg 431

                                                                       
Query: 181 ccattcaaggctaagacagatcgtcaatgaaacttttcaggaagccaaacaaaatatata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccattcaaggctaagacagatcgtcaatgaaacttttcaggaagccaaacaaaatatata 371

                                                                       
Query: 241 gataaacaaaattttacgatatgtaaggtcaggtcaagagaaacactgagagcaatggag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gataaacaaaattttacgatatgtaaggtcaggtcaagagaaacactgagagcaatggag 311

                                                                       
Query: 301 agttgccacgagggaaatgtcatttgaacaaagaacagatatagcattgtgttcagagag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 agttgccacgagggaaatgtcatttgaacaaagaacagatatagcattgtgttcagagag 251

                                                                       
Query: 361 ctggctagtattgctactgatacaatgctcacacctatttgtgcacatgtacacacacat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ctggctagtattgctactgatacaatgctcacacctatttgtgcacatgtacacacacat 191

                                                                       
Query: 421 acacacacacacacaccccactcatagcctcacatacatattttaataagacaaaccaga 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 acacacacacacacaccccactcatagcctcacatacatattttaataagacaaaccaga 131

                                                                       
Query: 481 ataagaatacctaaagagaataattgaaatagaatctaattgataattgtctaaggttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ataagaatacctaaagagaataattgaaatagaatctaattgataattgtctaaggttaa 71

                                                                       
Query: 541 tttgaggggctgcataaacaaattaacaaattaatttattcaatggtcatataggccagc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  tttgaggggctgcataaacaaattaacaaattaatttattcaatggtcatataggccagc 11

                     
Query: 601 attcaactgt 610
           ||||||||||
Sbjct: 10  attcaactgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 754
Length of database: 1154
Length adjustment: 10
Effective length of query: 744
Effective length of database: 1144
Effective search space:   851136
Effective search space used:   851136
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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