BAC Information

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BAC

Clone NameMSMg01-051B09
Chromosome6 (Build37)
Map Location 11,051,886 - 11,052,205
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC330264, LOC100040285, LOC667650, AA545190
Downstream geneNdufa4, Phf14, LOC100040844, EG625347
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051B09.T7 (MSMg01no051_b09.b1)MSMg01-051B09.TJ (MSMg01no051_b09.g1)
ACCAG279967AG279968
length1,2401,439
length of high quality
(start - end)
321 (76 - 396)186 (68 - 253)
definitionCHROMAT_FILE: MSMg01no051_b09.b1 PHD_FILE: MSMg01no051_b09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:16 2005CHROMAT_FILE: MSMg01no051_b09.g1 PHD_FILE: MSMg01no051_b09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTAACATTGGGCGCTATAGACTCCTAAGGGAGAGGATCCGCGGAA
TTCCATTTTCTTTACCTTCTTTTCAGTTTTTTAAAACTAGAGCTTGTAGA
ATTTTACTTCCTTATATTATGTCATAGGCCCTATCCTAACATTGTATTGA
CATTTTAAATGATCATTTAATCTTTTTTTTATTAATTCTTTGAGAATTGG
GGCAATGAATTTTAATCATACACCAACTCTTCCTAGATCCTTTCTCCTTC
CTTACATATCAATCCTCTATGTTTTTAAGCTCACCAAGTTCAACTTGCGC
TGCCAATATACACTTAGTTGTGAAGCATTCCTCTATACTTCTTCCAGCAG
CAATTAATTGTCACCATTTTCATAGATGGGATGAAATACCACTTCCTCAT
TTTTACCAACTTAATTTATGCATATTCTGAGACTGACGTGTGAAGTGCTG
TTATCAATGCCCCGTTACCCTGAAATTCTGGAGCTATCCAAAAGAAATGA
CTATAGACTATAATGTTTGGGAGTCTGTGAATGTTCTATGGCCCACATTT
GGGGTTATCCTGCATTGTCTAGTCTAGACATTGTCACCCGTTACTATAAC
TTCCATGTAACTCCATTTATAATTTAAAAATATGTATCTCTCTATATTTA
GTATTTTCTTCCGCAGTATGTTTGCTATATGATTTTCTCCTATCTGATAA
TTTCTTAATTTATTTTGTTGTGTTAGTTATTTTTCCTTTTATTCCTCTTT
CTTTATCTCTGTTCCTATCCTTGTTCCTCTTATTTCTCTTAATTACTTTG
ATTTTAATTTTCTTTTTCTTTTTTCTGTTTTTGCTTTTTTATTTTTTTTT
TTTTTGTTTTTTTTTTTTTTTTTTTCTTTTTTCCCTTCTTTTTTTTTTTT
TTTTTCTTCTTCTTTCATTTTAATTACTTCTTTATTTTTCTTTTCCTCTC
TTTCTTTCTCTCTTTTCTTTCTTTTTCTCTACTCTTCTTTTTTTTTTTTT
TAATTACTTTAATTTTTTTTTCTTACCTCTCCATTCAATTTTTCTCTTTC
TTTTCTTATCCCTTTTTCTATTTTTCTATTCTTTTTTTTTCTATTTTCTT
CTCCTTATTCTTTTCTATTCTTTTTTATTCTTTCTTCTTTTTTATATCCT
TTCTTCTTATTTAATTGATTTTTCTACGTATTTACTTCTCTTTTATTTTT
TTCCTTTATTACTATTCTTCTTAGTACTTTCTTCTTTATT
TTTTTGATGATAGGAGNCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCTTTCTTTTTGTGGAATGGGTTTTAAATCCAAT
CATAGAGTGCTTGGTTTTTCCTCCTTCCCCTGTGTCACTATTGCATAATC
CCATTGTGTAGGTAAGTTAATCTTGTAGATCACTGGATTTGCAGCTGCAT
GGCATTTATTTGTTTCTTCTGGTACCGTTTAACATACCGAGTACTATTCA
GTACTGTGACCACTAATCAATAGGGATAAAATCTCTACTTATGGAATATC
ATGGTTTTTTCATGTTCAGCGTGATATATGCGTTTTGTTCTCATCTTTAT
ATTCTATTCTTTTTTTGTCTTTTTTTATTTCATATTCTTATCTTGTTTTT
TTTTTTTTTATTTATTCTTCTCTTCTTTTTTTTTTTTCTCTCTTTTTTTT
TCCTCTCTCTTTTTTTCCCCCCTCTTTTTTTTTTCCCTCTTTTTCTCTTT
TTTTATTTTATATTTTCTATCTCTTTCTTTTTTTTTTCTTTTTTTTTCTA
TTCTCTTTTTCTTTTTTTCCCTTATTTTTTTTTATCTTTTTTTTTTTTTT
TTTTTTTTTTTTTCTTTTATTTTTTATTTATTCTTTCTTTTTTTTTTTTG
GTATTTTCTTCATTTTTATTTTTTTTTCTTTCTTTTTTTTCTCTTTTTTC
TATTTATTTTTTCCTCTTTCATTTCTTTTTTTTCTTCTTTTATTTTCTAT
TCTATTTATTTTTCTTCTTTTCTTTCTTTTTACTTTCCTTCTTTAATCTT
CTATCTTTTTTATTTTTTCTTTTATCTTGTCTTTCTTTTCTCTATTTTTT
TTTTTTTCTTATTTTTTCTTTTTCATTTTTTTCATTTATTTTTTTTTCCA
TTTTTTTTTTTTTTATTTTTATTATTTTTTATTTATTTTTATTTATTTTA
CTTATCTTTCTCTTATTTTTTTTTCTTTTTTTTTTCTTTTTTTTATCTCT
TATTCTTTTTTTTTATTCTTATTCTTCTCTATTTCTTTCTTTACTCTTAT
TATGTCCTTTTTCCTTATTTTTTTTTTTATTCTTTTCCTTTTTTTTTTCT
TTCTTTTTTTTCTTTTTCTCTCATCTTTTTTCTATTTTCTTTTTATTATT
TCTTTTTTTCTCTTTTTTATTTATATTTATTTTCTTTATTTTTTGTCTTT
CTCGTTCCTTTTTTTTTCTTTTCTTTTTTCGTTTTTTTTCTTTTTTTATT
TTTATCCTCTGTTTGTATTATTTATTTTTTCTTTCTTCNTTTTTCCTTAT
TATCTTTTTTCTTTTCTTTTTCCTCTTCTTCTCTACTTTTTCTCTACTTA
TTTTCATTATTTTTATCTCCCCCANTTTNTTGTNTTGTATTTTATAATTT
TTATTACCCCATCTTTTTATTTCTTTATATGTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_b09.b1 MSMg01no051_b09.b1 CHROMAT_FILE:
MSMg01no051_b09.b1 PHD_FILE: MSMg01no051_b09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:16 2005
         (321 letters)



>mm_chr6_11051686_11052405
          Length = 720

 Score =  543 bits (281), Expect = e-159
 Identities = 311/321 (96%), Gaps = 1/321 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttttttaaaactagagcttgtagaattttacttccttatattatgtcataggccctatc 60
           ||||||||||||||||||||||||||||||||||   |||||||||||||||| | ||||
Sbjct: 201 gttttttaaaactagagcttgtagaattttacttgagtatattatgtcataggtcatatc 260

                                                                       
Query: 61  ctaacattgtattgacattttaaatgatcatttaatcttttttttattaattctttgaga 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ctaacattgtattgacattttaaatgatcatttaatc-tttttttattaattctttgaga 319

                                                                       
Query: 121 attggggcaatgaattttaatcatacaccaactcttcctagatcctttctccttccttac 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 attgaggcaatgaattttaatcatacaccaactcttcctagatcctttctccttccttac 379

                                                                       
Query: 181 atatcaatcctctatgtttttaagctcaccaagttcaacttgcgctgccaatatacactt 240
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 380 atatcaatcttctatgtttttaagctcaccaagttcaacttgtgctgccaatatacactt 439

                                                                       
Query: 241 agttgtgaagcattcctctatacttcttccagcagcaattaattgtcaccattttcatag 300
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 440 agttgtgaagcattcctctatacttcttccagcagcaattaattgtcaacattttcatag 499

                                
Query: 301 atgggatgaaataccacttcc 321
           |||||||||||||||||||||
Sbjct: 500 atgggatgaaataccacttcc 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 321
Length of database: 720
Length adjustment: 9
Effective length of query: 312
Effective length of database: 711
Effective search space:   221832
Effective search space used:   221832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)