BAC Information

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BAC

Clone NameMSMg01-051F12
Chromosome6 (Build37)
Map Location 17,820,759 - 17,953,063
singlet/doubletdoublet
Overlap geneSt7, Wnt2
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
Downstream geneAsz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051F12.T7 (MSMg01no051_f12.b1)MSMg01-051F12.TJ (MSMg01no051_f12.g1)
ACCAG280137AG280138
length1,246756
length of high quality
(start - end)		187 (119 - 305)241 (135 - 375)
definitionCHROMAT_FILE: MSMg01no051_f12.b1 PHD_FILE: MSMg01no051_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:54 2005CHROMAT_FILE: MSMg01no051_f12.g1 PHD_FILE: MSMg01no051_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:50:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,820,759 - 17,820,933)(17,952,827 - 17,953,063)
sequence
NNNCCGGCATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAAT
TCTCTGTGGCCATGGCCCCTTTTGATTTCAGACCATCATGACAGTGAAGG
CGTGGGACACTTTATGGAGGTGTTCGCCCCGGTAAGATCCTGTGGTGGAA
GCCCTCACTATAGAGGACCAGGAAGCACAAATGGGACCCGAACCAGGGGT
CAAGTTAAATGCCCTTCAAAGGTCCACTCCTTAGGAGTCCATGTAGGAAA
TTGGAAAGAGACTTAACAAGACAGTAATGGTGTAACTGAGGTGCGGCGTA
CTTTCGGTCTGAGCAATTGCATATTTTAACTTGAGTCCAAACCTGACTAG
ACAGGCTTTGATTAGTCTATTACAAAGGACATTCTCATGGACTGCAATTA
TTTTTTCTGAGGGTAATCTTGAGGTCATATCTGTACTATGCATAGACAAT
TTTTTTTTTTCCCCCCCCGAATATCTGTTAGCTCCTATAAAAAAAAAAGG
GGTATCATGCTCTGTTCTGTTCTGTATCATTTTGTATTGTTCACATGTCT
TTGCTATATGGTTTAATTTTGTATGATACTATTCTTCTGTTTTATTGCTT
TGTACCTTAGTCTGTATCGTTTTTTTTTTCCCTTTTATTTATTTTTTTTG
TTATCCTTTATTTCTTTGTTTTTATTCCTTTTTTTTTTTTTTTTTTTTTT
CTTCTTTTTATTCTATTTTTTTTATTTTTTTTTTTTTTTTTTATTCTTCT
TTTTTCTCTATTTTTCTCTTTTCCTTTTTTTTTTTTTTCTTTTTTTTTTT
TTTCTTCTTTTTTTTCTTTTATTCTTTTTTTTTCTTATTTCTTCTCTTTT
TTTCTTTTTTTTTTACTTTTTTTTTTTTTTTTTTCTTTTTTCCTAATCTT
TTTTTTTTTTCTTTTTTATTTTTTCTTTTTCTTTTTTTATCTCTTTTTTT
TCTTCTTTATTTTCTTTTTTTTTTTTTTTCTTTCCTTCTTTTTCTTTATC
TTTCTCCTTTTTCTTCTTTTTTTCCTATTTTTTTTTCTTTCTTTTTTTCC
TTTTTCTTCTTCTTTCCTCTTTCTTTTCTTCTTCTTATCTTCTCTCTTCC
TTTTGCTCTCTCATTTTATCTTCTCCCTTTTTATTATTCTCTTTCTTTGT
TCCTTTTTTATTATTTTTCCCCTTTATCTTTTTTTCTTCTTTTGGTTCTC
TTGCTTTCTCTTTATCTTTTATTCTATTGTTCTTTTCTTCTTTTTT

GTTTTGNNNGGTGGGNNTGGGTGGTGTTTTTNNTNTCTTTTTTTTNNTCC
TCCCNCNNCCCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAAGTCTGTGGCA
ACCCAGCTCCTAAAATCATTAGATAAGTCTTGTGTTGTGGCCTGGCTTAT
AGACACTTATGAATACTGTCTATATCCTGGGTGTTATTAAAAACAAGGAA
ATAAGATTTTTTTGAATATTCCAAAATACATATTCTTTTTTTATTGCAAT
TCTTTTTTTTTCTTTTTTTAATTAGGTATTTTCTTCATTTACATTTCCAA
TGCTTTCCCAAAAGTCCCCCATGTCTTCTCTCCTCCACTTTCCTCCTATC
CCCCACTCCCACTTCTTGGTCCTGCCGTTCCCCCCGGTACTTAGGCATAT
AAAGTTTGTTAGTCTAATTGTCCCCCCCTTTCCACTTATGGTCTACTAGG
CCATCTTCTGATACATAATGCGTCTAGATACACTAGCTCCTGTTTATTGG
TTAAATTATATTTGTTGTCCTACCTATAGTCTCGTCTATATTCATTTATT
TCCTTGTATTTACTTTCTCTGTGCCTATATTGGTATTCATGTTTACCCTC
TATTAAATAGAACGCTTTAATACTATTTCCTCACTTTCCCTCTCCCTTTT
TTTTTCTTTCTCCTCTTCTTCCCCTCTTTTCTTCCTTTCCTTTATCTTAC
TCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_f12.b1 MSMg01no051_f12.b1 CHROMAT_FILE:
MSMg01no051_f12.b1 PHD_FILE: MSMg01no051_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:54 2005
         (187 letters)



>mm_chr6_17820547_17821134
          Length = 588

 Score =  300 bits (155), Expect = 4e-86
 Identities = 170/175 (97%), Gaps = 1/175 (0%)
 Strand = Plus / Plus

                                                                       
Query: 13  ggtaagatcctgtggtggaagccc-tcactatagaggaccaggaagcacaaatgggaccc 71
           ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 213 ggtaagatcctgtggaggaagcccctcactatagaggaccaggaagcacaaatgggaccc 272

                                                                       
Query: 72  gaaccaggggtcaagttaaatgcccttcaaaggtccactccttaggagtccatgtaggaa 131
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 273 gaaccaggggtcaagttaaatacccttcaaaggtccactccttaggagtccatgtaggaa 332

                                                                  
Query: 132 attggaaagagacttaacaagacagtaatggtgtaactgaggtgcggcgtacttt 186
           |||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 333 attggaaagagacttaacaagagagtaatggtgtaactgaggtgcggtgtacttt 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 588
Length adjustment: 8
Effective length of query: 179
Effective length of database: 580
Effective search space:   103820
Effective search space used:   103820
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no051_f12.g1 MSMg01no051_f12.g1 CHROMAT_FILE:
MSMg01no051_f12.g1 PHD_FILE: MSMg01no051_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:50:54 2005
         (241 letters)



>mm_chr6_17952698_17953336
          Length = 639

 Score =  424 bits (219), Expect = e-123
 Identities = 234/239 (97%), Gaps = 2/239 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaagtctgtggcaacccagctcctaaaatcattagataagtcttgtgttgtggcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 cttgaagtctgtggcaacccagctcctaaaatcattagataagtcttgtgttgtggcctg 307

                                                                       
Query: 61  gcttatagacacttatgaatactgtctatatcctgggtgttattaaaaacaaggaaataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 gcttatagacacttatgaatactgtctatatcctgggtgttattaaaaacaaggaaataa 247

                                                                       
Query: 121 gatttttttgaatattccaaaatacatattctttttttattgcaattctttttttttctt 180
           || ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 246 ga-ttttttgaatattccaaaatacacattc-ttttttattgcaattctttttttttctt 189

                                                                      
Query: 181 tttttaattaggtattttcttcatttacatttccaatgctttcccaaaagtcccccatg 239
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 188 tttttaagtaggtattttcttcatttacatttccaatgctttcccaaaagtcctccatg 130


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 639
Length adjustment: 9
Effective length of query: 232
Effective length of database: 630
Effective search space:   146160
Effective search space used:   146160
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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