BAC Information

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BAC

Clone NameMSMg01-051N16
Chromosome6 (Build37)
Map Location 39,734,230 - 39,734,561
singlet/doubletsinglet
Overlap genenone
Upstream geneHipk2, Tbxas1, 1700025N23Rik, Parp12, 4930599N23Rik, A630082K20Rik, Slc37a3, Rab19, Mkrn1, ENSMUSG00000068601, Dennd2a, Adck2, Ndufb2, Braf, Fth-ps2
Downstream geneMrps33, LOC665247, LOC665254, EG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-051N16.T7 (MSMg01no051_n16.b1)MSMg01-051N16.TJ (MSMg01no051_n16.g1)
ACCAG280496AG280497
length1,457687
length of high quality
(start - end)
39 (20 - 58)330 (73 - 402)
definitionCHROMAT_FILE: MSMg01no051_n16.b1 PHD_FILE: MSMg01no051_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:08 2005CHROMAT_FILE: MSMg01no051_n16.g1 PHD_FILE: MSMg01no051_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:52:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCTGGAATTCTCTAG
CAGATGCCTTCCCGTTTATTACCAACANACTTGTTAGGTCTATAATCTTT
TTAGCCCCTTATATACTAACGTGTTTTCCCCCTNGATTAANNAGTATTTA
CAATCTACTTGGGGAGACAAAATTTCGAGTACATATGGCACAAATCCACC
CGCAACTGTAGTGTCATGTCATTGCCATCCCTGAGGTGCTGAGCTCCTAT
CTGTAAGTGAAGTCATGATGAAAGCCAGTGGCAGGTCTTCATTCTGTTCT
GTTTGCTAATCTGCCATTGCACCACATCCACGTCTGCCTCAACGTTTCTC
TCTTCCCAGTCTTCTTCCATTCATGGCCTCGACTTTACCTCTCTCTTTCC
ATTTGTTTATTGTGTTTTTATTACTCTCATTTTTTTTTTCTTATTTGATG
TCTGAGCTATTTATTTCTTTTTTTTCCTTTTTTTATTCTCCTTTTTTTTT
TTTTCCCCCCCCCCCCTTTATTTCCTTCTCCTCTCCCTCACCCAAAAAAA
AGTGTTTTTTCTTTTCTTTTTTTTTCTCTTTTTTCTTCCCTTTTTCTTCT
TCTTCCCCTCCTCTTCTTTTTTTCTCCTCTATTTCTCTTCTCTTCTTTCT
CCTTTTCCTTCTGTTCCTCTTCTCTTTTTTCTTTCTTCTTCTTTTTTTTT
CTTTTTTCTATTTCTTTTTTCCCTTTTTTTTATTATTTTCTTTTTCTTTT
CCTCTTCTTTCTTTTTCCTTCTTTTTTCCTTCTTTTTCTCATTTTTCTTT
CTTTCTCTTTTACTCCTCCTTTCTCCCCCTTTATATTTTCTTACTTTCCT
TTTCTCCTTCTCTATTCTCTTTTCTTTATCTCTTTTTCTTCTATTCTTCT
TCTTTTTTTTTCCTTTCTTTTCTTCCTTTCTTTTTCTTTCTTTTTTTTTC
TATCTTTCTCTTTTCTTTTCTCTCTTCTCTTTTTTCTTTTTTTTCTTCTT
CCTTCTTTTCCTTTTTATTTCCTTCTTTCCTTCTTTCTTCCTTTCTCTTC
CTTTCTCTTTTTTTTCTTCTTTTCCTTCTTTTTCTTTCTTTTACTTTCTT
TTTCTCTTTTCTTCTCTTTTATTTTCTCCTTTTCTTTCTTCTATCTTTCC
TCCTTCCTTCCCTATATTCTTTGTCTTTACCTTTTCTTTTTCTCTTATCT
ATTTTTTCTTCTTTTTCTCTTCTAATATTCTCTCTTTACCTTTATTTTTT
CTCTTCTTTCCCCTTTCCTTTTCTTTTTTCACCCTTCTTCCCTTATCTCT
TATCTCTTCTATCTCCTTCTTTATCTCCTGTCCTATCTCTTTTGTTCTCC
TTTTATTTATTCTTTTTTTTATTCTTTTTTATTTTTTTCCCCTTTTTACT
TTTTCTTCTTTGTTCTACCTTATTTTTTCTCTCATCTTTATTTCTTTTTT
TTTATTT
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAAGACAGTCTAGGCTGTGTAGCCAGAC
TCTGAATAACAAAACAACAAGTCATTATTGTGGCAATTGAAAAAAATTTA
GATATGACTTTAACTAACAGGATTTAAACAATATCAATAATGTGACAACC
AGGATGATTTGGTAATTGCATTATGGTCATGTATTATGGCTATAGAATTT
CGTTGGTTTAGAGAATGAAAAATATTTACGGGCCAAAGAACATATTTTTT
TTCTTTACCTTCTTTTTTATTTTACAATGTACATTACATCTCCCCTCCTC
CTCTTACCCTTCCAACACGTGTGCACAGTGCCAGAAGGTCTTGAACTTTT
TATTCTTTTCGCCCCCCCGGNCTAAGATTATACTGTAATTTTGCAACATT
TTTTTTTCAAATAGTCCTGTTTTCACTGAACACCTGTCAAATACCATTTA
TTTTTTGTTAAATATTATTCATTATTTCCTCTTCAATTATTTTATTTATC
GCTATCATACAGGTCTTTGTTTCTCTTTTTATCTGTTCACCTGAAGAATT
TTTATCTATAGCCATCGTTTTTCCCCTCATATTCTATTTTATCCCGCCCT
TGCTCTTCTTCTCTTGTCTCTTTTTCTTTTTTCTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no051_n16.g1 MSMg01no051_n16.g1 CHROMAT_FILE:
MSMg01no051_n16.g1 PHD_FILE: MSMg01no051_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:08 2005
         (330 letters)



>mm_chr6_39734030_39734761
          Length = 732

 Score =  528 bits (273), Expect = e-154
 Identities = 317/339 (93%), Gaps = 16/339 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagacagtctaggctgtgtagccagactctgaat-aacaaaaca---acaagtcattat 56
           ||||||||| || ||| |||||||||||||||||| |||||||||   ||||||||||||
Sbjct: 201 caagacagtttaagctatgtagccagactctgaataaacaaaacaacgacaagtcattat 260

                                                                       
Query: 57  tgtggcaattgaaaaaaatttagatatgactttaactaacaggatttaaacaatatcaat 116
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggcaattgaaaaaaacttagatatgactttaactaacaggatttaaacaatatcaat 320

                                                                       
Query: 117 aatgtgacaaccaggatgatttggtaattgcattatggtcatgtattatggctatagaat 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatgtgacaaccaggatgatttggtaattgcattatggtcatgtattatggctatagaat 380

                                                                       
Query: 177 ttcgttggtttagagaatgaaaaatatttacgggccaaagaacatattttttttctttac 236
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 381 ttcgttggtttagagaatgaaaaatatttacaggccaaagaacatattttttt-ctttac 439

                                                                       
Query: 237 cttctttttta-----ttttacaatgtacattacatctcccctcctcctcttacccttcc 291
           ||||      |     ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cttc------aaaaaattttacaatgtacattacatctcccctcctcctcttacccttcc 493

                                                  
Query: 292 aacacgtgtgcacagtgccagaaggtcttgaacttttta 330
           |||||||||||||||||||||||||||||||| ||||||
Sbjct: 494 aacacgtgtgcacagtgccagaaggtcttgaatttttta 532


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 732
Length adjustment: 9
Effective length of query: 321
Effective length of database: 723
Effective search space:   232083
Effective search space used:   232083
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)