XXXXXXXXXXXXXXXXXXXXXXCTATTCCGAGAGATCCGCGGAATTAAGG
CCTATACCTAAACATAATAAAAGCCATTTCCTGAAAATCAACAACCAATA
TCAAATTAAATGGAGATATACTTGAAGCAATCTCACTAAAACCGAGGACA
AGACAAAAGTGCCCATTCTCCCCATATCTATTCAATACAGTACTGCAAGT
GCTAGATAGAACAGTAAGACAACAAAAAGAGATCAAGGGGATACAAATTG
GCAAAGAAGAAATTAAGGTATCACTATTTGCAGATGATATGATAGTATAC
ATAAATAACCCCAAAAATTCTACCAGAGAACTTCTCCAGCTGATAAACAA
CTTCAGCAAAGTGGCTGGATATAAAATTAACTCAAATAAATTAGTAGCCT
TCCTTTATACAAATGATAAACAGGCTGAGAAAGAAATTAGGGAAATAACT
CCCTTCACAATAGCCACAAATAATATAAAATATCTTGTGGTAACTATAAC
CAAACAAGTTAAAGATCTGTGTGACAATAACTCCAAGTCTCTCAAGAAAG
GAATCAAAGAAGATCTCAGAAAATAGAAAGATCTTCCATGCTCATGGATT
GGCAGAGTTAACATAGTACAATGAGCTCCCTACCAAAGGCAATATACAGT
TTTAATGCAATGCCCATCAAAAGTCTGACACAATTCTTCAAAGACATGGA
ATTCGCAATTCTCAAATTCAT

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCAGGTATCCTTCGGTCCCAGACTCCCAGTATTG
GAATTAGGAATTACTGGCATGCAATTCTGCAGTTGTTTTGTTTGTTTGTT
TGTTTTGTTTTGTTTTGTTTTGCATTGTTGTGACAGGCACGAAATTGGGT
CTTCATGCTTGTGTAGCAAGCCCTTTTTCAGCTGAGAATTTTTTCCTGCC
TTGTTTATGTGTGACTTTTAGGTCTTAGAAGTTTTCCAAGCCTATCATAT
GGAAGTGTTTGCATAAGTATTCCACTTCTAGAAAAGAAATAGCTAAGAAG
GGAGTACACCAAGTATTTCCTAAAAAGGCTAATATATAATCTGGAAAAGA
GATGCAAGATAACAATTTCACCCACTGAAAATTGTATACTTACTTAGATT
TTAGAAATTTATTTTGCACATATAATATTTATTCTTGAGCCTTCCTAACT
CTGCATTCAAGTAGCTCTCAGAACTAACCATACAGGTGCAGAAATGCACC
ACAGAAATACACAAGGCACAGTGTCATAGACAGTGCATGCTTGTTTGTTT
GTTTGTTTGTTTGCTTGTTTGTTTGTTTCTCTTCTTCCCAGTGTGGAGGA
ATTCTTCACGTGTGCATGTCAGTTGGCAGGGAGCACTTCATTGCGTGCTG
GCGATTTAGCAT

Query= MSMg01no052_g05.g1 MSMg01no052_g05.g1 CHROMAT_FILE:
MSMg01no052_g05.g1 PHD_FILE: MSMg01no052_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:52:59 2005
         (561 letters)



>mm_chr6_101880419_101881379
          Length = 961

 Score = 1054 bits (545), Expect = 0.0
 Identities = 551/553 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtatccttcggtcccagactcccagtattggaattaggaattactggcatgcaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 889 caggtatccttcggtcccagactcccagtattggaattaggaattactggcatgcaattc 830

                                                                       
Query: 61  tgcagttgttttgtttgtttgtttgttttgttttgttttgttttgcattgttgtgacagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 829 tgcagttgttttgtttgtttgtttgttttgttttgttttgttttgcattgttgtgacagg 770

                                                                       
Query: 121 cacgaaattgggtcttcatgcttgtgtagcaagccctttttcagctgagaattttttcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 cacgaaattgggtcttcatgcttgtgtagcaagccctttttcagctgagaattttttcct 710

                                                                       
Query: 181 gccttgtttatgtgtgacttttaggtcttagaagttttccaagcctatcatatggaagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 gccttgtttatgtgtgacttttaggtcttagaagttttccaagcctatcatatggaagtg 650

                                                                       
Query: 241 tttgcataagtattccacttctagaaaagaaatagctaagaagggagtacaccaagtatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tttgcataagtattccacttctagaaaagaaatagctaagaagggagtacaccaagtatt 590

                                                                       
Query: 301 tcctaaaaaggctaatatataatctggaaaagagatgcaagataacaatttcacccactg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 tcctaaaaaggctaatatataatctggaaaagagatgcaagataacaatttcacccactg 530

                                                                       
Query: 361 aaaattgtatacttacttagattttagaaatttattttgcacatataatatttattcttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 aaaattgtatacttacttagattttagaaatttattttgcacatataatatttattcttg 470

                                                                       
Query: 421 agccttcctaactctgcattcaagtagctctcagaactaaccatacaggtgcagaaatgc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agccttcctaactctgcattcaagtagctctcagaactaaccatacaggtgcagaaatgc 410

                                                                       
Query: 481 accacagaaatacacaaggcacagtgtcatagacagtgcatgcttgtttgtttgtttgtt 540
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 409 accacagaaatacacaaggcacagtgtcatagacagtgcatgtttgtttgtttgtttgtt 350

                        
Query: 541 tgtttgcttgttt 553
           |||||| ||||||
Sbjct: 349 tgtttgtttgttt 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 46
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)