Query= MSMg01no052_g11.b1 MSMg01no052_g11.b1 CHROMAT_FILE:
MSMg01no052_g11.b1 PHD_FILE: MSMg01no052_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:01 2005
(588 letters)
>mm_chr6_55569854_55570840
Length = 987
Score = 1108 bits (573), Expect = 0.0
Identities = 584/588 (99%), Gaps = 1/588 (0%)
Strand = Plus / Plus
Query: 1 gtgtatatggacttggcagcagtgtgtgtctttttcttttgccctgtgtgctatctttgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgtatatggacttggcagcagtgtgtgtctttttcttttgccctgtgtgctatctttgc 260
Query: 61 tgcatattttacctctgagtttgctataaatacttccgtgtattggttttgttttagaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcatattttacctctgagtttgctataaatacttccgtgtattggttttgttttagaaa 320
Query: 121 aataagtcctctaaaaaaaaagataaaatgttgaaggattgcatattagagaatttctat 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aataagtcctctaaaaaaaa-gataaaatgttgaaggattgcatattagagaatttctat 379
Query: 181 actgctttattattcaagataaaaaagtacccgttccccaagttcttttaagtttgacta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 actgctttattattcaagataaaaaagtacccgttccccaagttcttttaagtttgacta 439
Query: 241 tattgttactgnatccattggtctttattcctatggatagtgtcagattttcaacaggta 300
|||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tattgtaaccgtatccattggtctttattcctatggatagtgtcagattttcaacaggta 499
Query: 301 tttttaaaaataattttccatctgcctacaaggctgtttgagctcactgaaaatctgtct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tttttaaaaataattttccatctgcctacaaggctgtttgagctcactgaaaatctgtct 559
Query: 361 ctggaagggggtttgtctctcccatttcagagccaaacatgtttgtgtcaaattgtcctc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctggaagggggtttgtctctcccatttcagagccaaacatgtttgtgtcaaattgtcctc 619
Query: 421 tgagaccccttgtctgggcttgcgctgaccctctgacagggaggagaacagaagagcagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tgagaccccttgtctgggcttgcgctgaccctctgacagggaggagaacagaagagcagc 679
Query: 481 tgaagagtaaagacatcatgtccttgagaacagctggacagcagtccatgcccagcagat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tgaagagtaaagacatcatgtccttgagaacagctggacagcagtccatgcccagcagat 739
Query: 541 gttcctagtgttatcccatgagagcaaagtctcttcagtaaaaaaaga 588
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gttcctagtgttatcccatgagagcaaagtctcttcagtaaaaaaaga 787
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 987
Length adjustment: 10
Effective length of query: 578
Effective length of database: 977
Effective search space: 564706
Effective search space used: 564706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_g11.g1 MSMg01no052_g11.g1 CHROMAT_FILE:
MSMg01no052_g11.g1 PHD_FILE: MSMg01no052_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:01 2005
(613 letters)
>mm_chr6_55646237_55647247
Length = 1011
Score = 1093 bits (565), Expect = 0.0
Identities = 598/613 (97%), Gaps = 8/613 (1%)
Strand = Plus / Minus
Query: 1 aatatctccagaatctacatagtaggaaagaactgacatcttccagatgtattcagatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 aatatctccagaatctacatagtaggaaagaactgacatcttccagatgtattcagatat 670
Query: 61 ctgtacacacacacacacacacatacatacatacatacatacatacatacatacatacat 120
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ctgt------acacacacacacatacatacatacatacatacatacatacatacatacat 616
Query: 121 acatacatacactgcatgcatggacacactcaatcaaattaaaacttttaatcttttaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 acatacatacactgcatgcatggacacactcaatcaaattaaaacttttaatcttttaaa 556
Query: 181 atattgagaattttcatacatgagtaccgtatttatatatttccaccccttacttttcct 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 555 atattgagaattttcatacatgagtaccgtatttatatatttccaccccatacttttcct 496
Query: 241 tgcaacttctcccatgtccccataactccatctcaaatttatgtccttttcttcaattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tgcaacttctcccatgtccccataactccatctcaaatttatgtccttttcttcaattat 436
Query: 301 ggacacacacacatacaaaatgactaatgagccaacttttaatatagaaacaacaaaata 360
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 435 agacacacacac--acaaaatgactaatgagccaacttttaatataaaaacaacaaaata 378
Query: 361 tattagacatatgaattagcaaagaaaacatgtgtgtccatatatgagtctacttagtgt 420
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tattagacagatgaattagcaaagaaaacatgtgtgtccatatatgagtctacttagtgt 318
Query: 421 cattcgtttgtatatatgtctagggctggtgggtttgaataacatattaagagtctcatc 480
||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 317 cattcatttgtatatatgtctagggctagtgggtttggataacatattaagagtctcatc 258
Query: 481 aatggaggatgattttcccagtgtcagccatgaattgcctataactcttcctctgcagaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 aatggaggatgattttcccagtgtcagccatgaattgcctataactcttcctctgcagaa 198
Query: 541 agggtcttgtgagacttttcccatcctcagtggcatgtaaactaacgctatcattgttcg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 agggtcttgtgagacttttcccatcctcagtggcatgtaaactaacgctatcattgttcg 138
Query: 601 ctccttgttcaga 613
|||||||||||||
Sbjct: 137 ctccttgttcaga 125
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 76
Number of extensions: 13
Number of successful extensions: 13
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1011
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1001
Effective search space: 603603
Effective search space used: 603603
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
