Query= MSMg01no052_m09.b1 MSMg01no052_m09.b1 CHROMAT_FILE:
MSMg01no052_m09.b1 PHD_FILE: MSMg01no052_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:29 2005
(674 letters)
>mm_chr6_73587142_73588214
Length = 1073
Score = 1180 bits (610), Expect = 0.0
Identities = 655/670 (97%), Gaps = 2/670 (0%)
Strand = Plus / Plus
Query: 5 gaattcactttagtacccgttttgagagcatgcttctcttctaacctttatgccagatgc 64
||||||||||||| | | ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 205 gaattcactttagcatcagttttgagagcatgcttctcttctaacctttatgccagacgc 264
Query: 65 aaaatttgtaacataaacttaaaaatattaactgcttttcaagttaatctatatcatagg 124
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 aaaatttgtaacataaacttaaaaatattaactgcttttc-agttaatctatatcatagg 323
Query: 125 ttttcaaatatatgagaacttttataaacctctgtcacatttccttgacattttatatga 184
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttttaaatatatgagaacttttataaacctctgtcacatttccttgacattttatatga 383
Query: 185 ctcagaacacatattttaggtttgaattaccaaggaggtcagtaatgtattgccttatct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ctcagaacacatattttaggtttgaattaccaaggaggtcagtaatgtattgccttatct 443
Query: 245 aatattgtatttaaaaattagaatttattcattgtgattttactggaatgatctttgtgt 304
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 444 aatattgtatttaaaaattagaattgattcattgtgattttactggaatgatctttgtgt 503
Query: 305 gttgcaaataagtttccttagtgagagatgaggagtgagcgtaaggacaaatatttagag 364
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 504 gttgcaaataagtttccttagtgagagatgaggagtgagcataaggacaaatatttagag 563
Query: 365 tacaattagaaagtatattagtttagtaatatgacatattataatatcaaaatataagaa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tacaattagaaagtatattagtttagtaatatgacatattataatatcaaaatataagaa 623
Query: 425 ataattaaaattttagacttgagtgtcatctgacttaatgtttttctcagcttaattgat 484
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 624 ataattaaaattttagacttgagtgtcatctgacttaatgtttttctcaggttaattgat 683
Query: 485 ttgttagttgaaacttaaattattttctctgttctggatgacaatatttcactttgtttt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttgttagttgaaacttaaattattttctctgttctggatgacaatatttcactttgtttt 743
Query: 545 gttttgtttttttcaagacagggtttctctttgtagccctggctgttctggaactcactc 604
||||| |||||||||||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct: 744 gtttt-tttttttcaagacagggtttctctttgttgccctggctgtcctggaaatcactc 802
Query: 605 tgtagaccaggaaggccttgaactcagaaatctgcctgcctctgcctcccaagtatggga 664
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 803 tgtagaccaggaaggccttgaattcagaaatctgcctgcctctgcctcccaagtgtggga 862
Query: 665 taaaaggcat 674
||||||||||
Sbjct: 863 taaaaggcat 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1073
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1063
Effective search space: 705832
Effective search space used: 705832
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_m09.g1 MSMg01no052_m09.g1 CHROMAT_FILE:
MSMg01no052_m09.g1 PHD_FILE: MSMg01no052_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:29 2005
(629 letters)
>mm_chr6_73710396_73711424
Length = 1029
Score = 1098 bits (568), Expect = 0.0
Identities = 600/614 (97%), Gaps = 6/614 (0%)
Strand = Plus / Minus
Query: 4 gtggcagctggacctccagagatctcatgccttgtctatgaaaccactcccaatggactc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gtggcagctggacctccagagatctcatgccttgtctatgaaaccactcccaatggactc 555
Query: 64 cccagctgggatctgagtggaacatgagaagagtagtctctagccattgtgagaactaac 123
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 554 cccagctgggatctgagtggaacatgagaacagtagtctctagccattgtgagaactaac 495
Query: 124 tcatctaactctttttctcctacatagcagctaatggagttaccaggattgaattggatt 183
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 494 tcatctaactctttttctcctacatagcagctcatggagttaccaggattgaattggatt 435
Query: 184 ctcttcactgtgattgtttttatattgtctgttctttacgtatttttgatactagactct 243
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct: 434 ctcttcactgtgattgtttttatattgtctgttctttatgtatttttgatattagactct 375
Query: 244 catctaatatataatttgcgtgaatgcgttctactatcttacagattttcttcacaaatt 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 catctaatatataatttgcgtgaatgcgttctactatcttacagattttcttcacaaatt 315
Query: 304 cttgattatatctttaaagaatgatacttgatgtttaattaaatttgtgctttttcaatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 cttgattatatctttaaagaatgatacttgatgtttaattaaatttgtgctttttcaatt 255
Query: 364 tattgcttctactttgtttcttttagaagaataaatttcttttgcattttttatttttct 423
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 254 tattgcttctactttgtttcttttagaagaataaatttcttttgcatttttaatttttct 195
Query: 424 ctcatatattacatcctgactgcagttcccttcctctatattccctcccccatgccagat 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 ctcatatattacatcctgactgcagttcccttcctctatattccctcccccatgccagat 135
Query: 484 ccactcatcttccatttcccttaaaaaa------taaaattaaattaaattaaattttta 537
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 134 ccactcatcctccatttcccttaaaaaaataaaataaaattaaattaaattaaattttta 75
Query: 538 aaaagcaggtttcacagggataccaaccaaacatggcataacaggttataataagactag 597
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 74 aaaagcaggtttcacagggataccagccaaacatggcataacaggttttaataagactag 15
Query: 598 gcacaaacccttat 611
||||||||||||||
Sbjct: 14 gcacaaacccttat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1029
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1019
Effective search space: 630761
Effective search space used: 630761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
