BAC Information

Click to search

BAC

Clone NameMSMg01-052O14
Chromosome6 (Build37)
Map Location 136,915,880 - 136,916,311
singlet/doubletsinglet
Overlap genenone
Upstream geneGrin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h
Downstream geneRerg, Ptpro, Eps8, Strap, Dera
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-052O14.T7 (MSMg01no052_o14.b1)MSMg01-052O14.TJ (MSMg01no052_o14.g1)
ACCAG281273AG281274
length743725
length of high quality
(start - end)
435 (38 - 472)405 (67 - 471)
definitionCHROMAT_FILE: MSMg01no052_o14.b1 PHD_FILE: MSMg01no052_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:40 2005CHROMAT_FILE: MSMg01no052_o14.g1 PHD_FILE: MSMg01no052_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:53:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTATACGACTCCTATATTCAGAGAAGGCGCGGAATTCAACCC
ACTCTTCCGATCCTCTGAAAGACCAGGAAAGGATGCCATGAAGCTAATTA
AGGAACACGCTTCCCAGCCTGCTCCTGGGATTGGATAGAGGTTGAGGTTG
GTGTTGCCCATAATCTACACACTGACACCTTTCCTAAACCCAATCGTACC
CCAGACAGGCAGAAAACAGCACAGCGAGGGGGAGGGAGAGTCTGGGCTTT
GTGTCTTTGTGGGGTTGACCCCTGCTGTGAGCTCAGGAAGAAGTTTAAGC
TGAAAGAAGGTAGGATAAGGTTCTCTGGAAAGCAAAAGGCTGATGTGGGG
TTGGTCAGCAGGGGCAACACCTAGCCTAGGAGAAACAGGAAATGACACAG
ACAAAACCGGAAACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGAGACAGAGTGTGTGTGTCATTCCCCCTCTTATTTTCACTTTCCTGTC
TTTTTGCTTTATTCGACCTCATCTTATTCTCACTTCTCTTTTTTCCTTCC
TATTTTCTATCTTCCCCTTTTCCCTCTGTTTCCCCCTATTCCCCTCTTCA
TCCTATCTTTTCTTCTCTCAACCTCGCCTTCACTATATTCCTAATCTCAA
CCAGCCTATTCACACTCTCATACTTCTCTCTCTTATCATTTTCCTACTCT
CTCTCCTCTTTTTCCATCTTTTTTCTACATTTTTCCCCCCCCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTTAGCAGAAACTCAAGAGATCCAAAGAGTTAC
ATTATTTTTAGTTGTGTGCATGGCTGGACATGTTTAGGTAAGGGTAGGTG
TGTGCCCATGCAGGCCAGAAGAGGAAGTATAAGACCTTGGAGCCGATAGG
AGTGGATTTAAAGTGCATGATGTAGGTGTGGGAGCCAAACTTCAGTCTCC
TGCAAGAGCAGCAAGTGCTCTTAAGCTTTGATGGTGCTCCTGATGATCCC
AGACGATCCTGTTCAAACACTTCTCAGACTGTTTTCTGTTGCTGTGATAA
AATACCAGGGACTGGGCAAATTATAACCAAGTTAGGTTATTTGGCCAATG
GTTTTGGTTCTGAAAGGATGGTGCTGGCTTCAAGCATAGACATTCTTGTT
ATGTCACAGCCTTGTAACAGACCAAGTGAGTTGGATAGAAATAGAAGAAA
ACGTATGTCTGAACTCTCATTGTAACTAACCTACGCCTTCATAACGGCAG
TATTCTTTCCATTTCAGTAAAGCATCAGCAGTCTCCTACAGATCTCCCAT
CTTGATACCCTTACATTAAGCTTAATTTCCAGCAGCATTCTTGAAGGCCT
GTTCAAGTCATATCGAAATTTAATCTGCTTCAGATTTTTTTTTTTACGCC
AAGCCCCCTCTGACCTTGAATGGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no052_o14.b1 MSMg01no052_o14.b1 CHROMAT_FILE:
MSMg01no052_o14.b1 PHD_FILE: MSMg01no052_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:40 2005
         (435 letters)



>mm_chr6_136915679_136916513
          Length = 835

 Score =  797 bits (412), Expect = 0.0
 Identities = 428/434 (98%), Gaps = 4/434 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   ggaattcaacccactcttc-c-gatcctctgaaagaccaggaaaggatgccatgaagcta 59
           ||||||||||||||||  | | ||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ggaattcaacccactc--cactgatcctctgaaagaccaggaaaggatgccatgaagcta 259

                                                                       
Query: 60  attaaggaacacgcttcccagcctgctcctgggattggatagaggttgaggttggtgttg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attaaggaacacgcttcccagcctgctcctgggattggatagaggttgaggttggtgttg 319

                                                                       
Query: 120 cccataatctacacactgacacctttcctaaacccaatcgtaccccagacaggcagaaaa 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cccataatctacacactgacacctttcctaaacccaatcgtaccccagacaggcagaaaa 379

                                                                       
Query: 180 cagcacagcgagggggagggagagtctgggctttgtgtctttgtggggttgacccctgct 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cagcacagcgagggggagggagagtctgggctttgtgtctttgtggggttgacccctgct 439

                                                                       
Query: 240 gtgagctcaggaagaagtttaagctgaaagaaggtaggataaggttctctggaaagcaaa 299
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 440 gtgagctcaggaagaagtttaagctgaaagaaggtaggagaaggttctctggaaagcaaa 499

                                                                       
Query: 300 aggctgatgtggggttggtcagcaggggcaacacctagcctaggagaaacaggaaatgac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aggctgatgtggggttggtcagcaggggcaacacctagcctaggagaaacaggaaatgac 559

                                                                       
Query: 360 acagacaaaaccggaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 acagacaaaaccggaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaga 619

                         
Query: 420 cagagtgtgtgtgt 433
            |||||||||||||
Sbjct: 620 gagagtgtgtgtgt 633


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 74
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 435
Length of database: 835
Length adjustment: 9
Effective length of query: 426
Effective length of database: 826
Effective search space:   351876
Effective search space used:   351876
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)