Query= MSMg01no053_h14.b1 MSMg01no053_h14.b1 CHROMAT_FILE:
MSMg01no053_h14.b1 PHD_FILE: MSMg01no053_h14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:24 2005
(537 letters)
>mm_chr6_101812491_101813428
Length = 938
Score = 919 bits (475), Expect = 0.0
Identities = 520/535 (97%), Gaps = 3/535 (0%)
Strand = Plus / Plus
Query: 5 gaattcttcccc-ttcccctggatcctgcaattttcctctctccttttgatgatgctccc 63
|||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttccccatt-ccctggattctgcaattttcctctctccttttgatgatgctccc 263
Query: 64 tgagacttgctgtagttaggtttgataacgatgtcacactgagtattctttattcactta 123
|||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 264 tgaggcttgctgtagttaggtttgatagcgatgccacactgagtattctttattcactta 323
Query: 124 ttctcaacattttggtcagctactctgatagaattttattgtttgaaatatttctggtat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttctcaacattttggtcagctactctgatagaattttattgtttgaaatatttctggtat 383
Query: 184 tactcatttccttaatttatttctcagtatttataaggtacctgctatctgcatgacatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tactcatttccttaatttatttctcagtatttataaggtacctgctatctgcatgacatt 443
Query: 244 tgatcattac-aaaggaagccaaagcaagtaatataaaggataccccaccatgatctttg 302
|||||||| | ||||||| ||||||||||||| | |||||||| ||||||||||||||||
Sbjct: 444 tgatcattgcaaaaggaaaccaaagcaagtaagagaaaggatatcccaccatgatctttg 503
Query: 303 tgtatcttttctatcaaatgaagtgagaaatctttacttctgaatgtgcgactcaaacgg 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgtatcttttctatcaaatgaagtgagaaatctttacttctgaatgtgcgactcaaacgg 563
Query: 363 gtttgccatcttcttgtcatcagccaggtaaacgcaaaaccgaaacaatatggtgacctc 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gtttgccatcttcttgtcatcagccaggtaaacgcaaaaccgaaacaatatggtgacctc 623
Query: 423 tgtctcatgagctgtaatcagagaatcaagtgtatcacccaggctgcatgatgagcataa 482
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 624 tgtctcatgagctgtaagcagagaatcaagtgtatcacccaggctgcatgatgagcagaa 683
Query: 483 ctctgaggtcacacataggaggcgtcatgagcctcttcattgtagtactttgcca 537
||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 684 ctctgaggtcacacataggaggcatcatgagcctcttcattgtagtactttgcca 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 938
Length adjustment: 10
Effective length of query: 527
Effective length of database: 928
Effective search space: 489056
Effective search space used: 489056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no053_h14.g1 MSMg01no053_h14.g1 CHROMAT_FILE:
MSMg01no053_h14.g1 PHD_FILE: MSMg01no053_h14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:24 2005
(384 letters)
>mm_chr6_95095242_95096021
Length = 780
Score = 654 bits (338), Expect = 0.0
Identities = 362/372 (97%), Gaps = 4/372 (1%)
Strand = Plus / Plus
Query: 13 ttttttttttttttgagaaagtctttttttccttatttactttaaaaagaatgattttgc 72
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ttttttttttttttgagaaagtctttttttccttatttactttaaaaagaatgattttgc 272
Query: 73 tggatctagaattccaggtttgtttgttttcaaagtgtttaaatcacagttatttagtgg 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tggatctagaattccaggtttgtttgttttcaaagtgtttaaatcacagttatttagtgg 332
Query: 133 gcctccgtgtgttgtttctttatttattttcttctgatccatcctccatgtcctggctcc 192
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 333 gcctccgtgtgttgttt----atttattttcttctgatccatcctccatgtcctggttcc 388
Query: 193 tgctgaacctatttcgtctttatcccataaggagactaggggtgagaggaatattatttt 252
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 389 tgctcaacctatttcgtctttatcccataaggagactaggggtgagaggaatattattct 448
Query: 253 ctccgtgtttatcaagctctgtgaaagtgttttcccctaggaaatacgcctcagttgtgg 312
||||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct: 449 ctccgtgtttatcaagctcggtgaaagtgttttctcctaggaaataggcctcagttgtgg 508
Query: 313 gaacaggttctgggtgtatttcaggatcattcctcctgtcctctaggcagaaccaccagg 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gaacaggttctgggtgtatttcaggatcattcctcctgtcctctaggcagaaccaccagg 568
Query: 373 cttcttactcag 384
||||||||||||
Sbjct: 569 cttcttactcag 580
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 780
Length adjustment: 9
Effective length of query: 375
Effective length of database: 771
Effective search space: 289125
Effective search space used: 289125
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
