BAC Information

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BAC

Clone NameMSMg01-053J12
Chromosome6 (Build37)
Map Location 95,244,982 - 95,245,125
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043262, LOC665856, Slc25a26, Lrig1, LOC625941, EG665865, LOC100043276, LOC100043680, Kbtbd8, LOC435912
Downstream geneSuclg2, LOC665886, LOC545867, C630007B19Rik, LOC100043685, 1700123L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053J12.T7 (MSMg01no053_j12.b1)MSMg01-053J12.TJ (MSMg01no053_j12.g1)
ACCAG281767AG281768
length722781
length of high quality
(start - end)
144 (94 - 237)78 (124 - 201)
definitionCHROMAT_FILE: MSMg01no053_j12.b1 PHD_FILE: MSMg01no053_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:33 2005CHROMAT_FILE: MSMg01no053_j12.g1 PHD_FILE: MSMg01no053_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGXXXXXXXXXX
XXXXXXXXXXXTTCCTTAGCTTGTGAGCCTACAGAACGGAAGAGCACTTG
TGGATGTAAAACATTATTTCCCAGGTGTTCAAACTGCTTTCTAAACATTA
GTTCATTAATTGCTCCTTTAAATCTTTCTCATTGATTTTTATATATTTTT
GAAAGAACAAATTTACTGTTTGTTTTGCATATGAAGAAAAGAGCTCATAT
CATTTACAAAGTAAGGCCTTATATCTCTTCTAAAACATACATCATAATTT
AACTTACAAGTTACCGGATTTATTTATAAGGTGCTGGATAATGTTATACA
TTTATGAACCCACCCAATAGTTTCATAATATCTTGCTAATATTGCATCAC
AAATCTGAATATTTGACCAATGTTCCTTCCTGTATCAGTCACAAAGGATG
CATCTTAATATTATAGCCGCCCAAGACTCTCACTTCGTACAGTACCTTAC
ATGCTGCTATCTATCATTATAATATGTCTATACTCACTACAACACCCACC
ACTATTACCTTTCGCAATCCAATTGCAATGCCTATTGCCATCCCTTTCCC
GTCCACTACTCTAATTGCTACTTCTCATTCATACCACTGTTCTCCTAAAG
CCGTTCTCACTTCTTTGTTCCTTTTACCTTTCTCTCCAATTTATTTACCT
TTATTCATTCACCCGATTTCCT
CTCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTTTAGCTCGGTACCCCATTTTTT
AGTAGGGTTATTTGGTTTTCTGGAGTCCAACTTCTTGAGTCCTATACATA
CATACATATGTATTTGTATATGTATATGTATATGTATGTGTATGTGTATG
TGTATGCCCATTCCCCCCTTCTCCCCCCCCTTTCCCCCCCCCCCCCCCCC
CCCTCTCCCTCTTTCCCTCCCCCCCCTCCCCCTTTTATCCTCTCTCCCCT
TCTCTTCCCACACCCCCCTCTTTTTTTTCCCCACACCCCTCCCCCCCACT
CCCTTTCCTCTCTTTTTTTCCTTTCCCCCCCCCTCCCTCTCTTTCTCTCT
CCCCCCCCCCCCCCCTCCTCTCCCTTCCCCCCCCCTTCCCATCTTCTCCC
TCCCCCTCTCCCCCCCCCTTCTCCTCCCTCCCCCCTCTTCTCCCCTTTCC
TCTCCTCCCTATCCCCCTTCCTCCCTCTTTCCCCTGCTCCCCCCTGTCTC
CTCTCCCCCCCCCTATCCTTTCCCTTCTCCCCCCCTCTTTTTTTTTTTCC
TCCCCCTACCCTTTTTCCCCCGCTCCCCCTATCTCTTCCCCCCCTCTCCT
CTTTTCTTTCCCTCTCCCTCTCCCCCCTCTCCCCTCCGCCCTCTCCCCCT
CTTTTACCGCCCCCCCCCCCCTTCTGTTCCTCCTTCCTCTCTCTTCTCCC
CCCCCCCCTATCTCCACCTTTTCTTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_j12.b1 MSMg01no053_j12.b1 CHROMAT_FILE:
MSMg01no053_j12.b1 PHD_FILE: MSMg01no053_j12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:33 2005
         (144 letters)



>mm_chr6_95244782_95245325
          Length = 544

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcacttgtggatgtaaaacattatttcccaggtgttcaaactgctttctaaacattagtt 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct: 344 gcacttgtggatgtaaaacattatttcccaggggttcaaactgctttctaaacattagct 285

                                                                       
Query: 61  cattaattgctcctttaaatctttctcattgatttttatatatttttgaaagaacaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 cattaattgctcctttaaatctttctcattgatttttatatatttttgaaagaacaaatt 225

                                   
Query: 121 tactgtttgttttgcatatgaaga 144
           ||||||||||||||||||||||||
Sbjct: 224 tactgtttgttttgcatatgaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)