BAC Information

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BAC

Clone NameMSMg01-053O18
Chromosome1 (Build37)6 (Build37)
Map Location 66,701,071 - 66,701,39256,305,359 - 56,305,718
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCrygf, LOC667781, EG667786, Mtap2, C030018G13Rik
Downstream geneRpe, 1110028C15Rik, Acadl, Myl1, LOC100043192, Lancl1, Cps1, Kif22-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053O18.T7 (MSMg01no053_o18.b1)MSMg01-053O18.TJ (MSMg01no053_o18.g1)
ACCAG282000AG282001
length706702
length of high quality
(start - end)
326 (45 - 370)360 (75 - 434)
definitionCHROMAT_FILE: MSMg01no053_o18.b1 PHD_FILE: MSMg01no053_o18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:58 2005CHROMAT_FILE: MSMg01no053_o18.g1 PHD_FILE: MSMg01no053_o18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:58 2005
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,701,071 - 66,701,392)(56,305,359 - 56,305,718)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATAAGCACTGCCGGCCGAGGCTGAAGATCCTGCAAAACCTAGCTG
GGGAGCCACGGGTCACTGCCCTGCAGCTGCTGGATGTGAAGTCTCACATG
AGGTACCCACGCAAGTGCCTCACCTCTGCCTGGGATGCTAAGAGCTTAAG
CCATGTGTCTGTGTCTGTGTGCTGGGATGAACCAGGAAGTGGGGGATGCT
CTGGGAGTGGGAAGGCTTCCTCCAGGAAAAGGAAGGAGATTCTTAGAATA
ATTTGTTTCCTGTGACTTGGGTACATACCATTTAGATCCTTCTGGTAAAG
TACACATTTTATCTATTATAGAGATCTCACAAATAGAAAATGTTTTAAAA
ATGGGAATTCAGTCTGTAACTTACTGTCTGGCAGATTTTTAAATGTGATC
CCAGAGGACCTAGTAGCTGATTTCTAGCAGTTTTTAAAGGATCATAATAA
TTCCTTCAAAGAAAAAGTTCATGGTTAACAAAAGACTTACTTTGAATGCT
TAACCTATCTATCACACTAAATTGTTCAGGTCTCACCATCCTCTCCAGAA
ACTGCATTATAATTTTGCCAAAACACCTCTATTCCCCTGAACAGTATATG
GCTTTTCTTTTTTTCTTATAATGACCCTCCTGAAATTGCATTTTTTTATT
TGTTTC
CACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGCAGAAAGATGAATGAAAGCCAT
TATCTACGACGTTCAGCTTCATGTTTTGGTTGAATTACTCTCAAGCTTTG
TCATAATTTTACTATGTAGAAAAACTTCACATCGTACTCATTAAGGTTCA
TTAGTGTTGTTTAATAACAGCTGTCAAGAAGACTTTAAATAAGGAACACT
CTCCAGTAAAAGCCTGAAGAATGTTAATTCCTTACATAGATTTACTATTC
TTTCTCCACAAGTAGCCCTCCATTCCCTGCAGAATTCACCTTTCATTACT
TATCAAATGCTGGTGGTCACCTCCAAAGTTATCATAGACTGTTTTATATG
CCTCAGGTTAATCAATGATCTATCTTCTCAAAAGGCCATGGTGGAGATCT
TAGATGCCTTCTCCTTCCATAAAGAGAAACCAAGGGAAACATTTTTCTAT
ACACACACACACACACACACACATACTCTCACACACACTCACTAAATATT
TTGACCGCTAACCTAAACTAGAATATAGAAACCTCCTCTACTTAGGGCTG
CTGTCCAACTTGAAGCAGTCCTGTGCAAGTCTTGGTCAAAATACTATGCA
CTTAGATGTCCAAAAATTGTTTTCTAATTAGACACAACCATCTTATGGAT
AT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_o18.b1 MSMg01no053_o18.b1 CHROMAT_FILE:
MSMg01no053_o18.b1 PHD_FILE: MSMg01no053_o18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:58 2005
         (326 letters)



>mm_chr1_66700869_66701594
          Length = 726

 Score =  607 bits (314), Expect = e-178
 Identities = 320/322 (99%)
 Strand = Plus / Plus

                                                                       
Query: 3   cggaattctataagcactgccggccgaggctgaagatcctgcaaaacctagctggggagc 62
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 203 cggaattctataagcactgcgggccgaggctgaagatcctgcaaaacctagctggggagc 262

                                                                       
Query: 63  cacgggtcactgccctgcagctgctggatgtgaagtctcacatgaggtacccacgcaagt 122
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacgggtcactgccctggagctgctggatgtgaagtctcacatgaggtacccacgcaagt 322

                                                                       
Query: 123 gcctcacctctgcctgggatgctaagagcttaagccatgtgtctgtgtctgtgtgctggg 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcctcacctctgcctgggatgctaagagcttaagccatgtgtctgtgtctgtgtgctggg 382

                                                                       
Query: 183 atgaaccaggaagtgggggatgctctgggagtgggaaggcttcctccaggaaaaggaagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atgaaccaggaagtgggggatgctctgggagtgggaaggcttcctccaggaaaaggaagg 442

                                                                       
Query: 243 agattcttagaataatttgtttcctgtgacttgggtacataccatttagatccttctggt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 agattcttagaataatttgtttcctgtgacttgggtacataccatttagatccttctggt 502

                                 
Query: 303 aaagtacacattttatctatta 324
           ||||||||||||||||||||||
Sbjct: 503 aaagtacacattttatctatta 524


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no053_o18.g1 MSMg01no053_o18.g1 CHROMAT_FILE:
MSMg01no053_o18.g1 PHD_FILE: MSMg01no053_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:58 2005
         (360 letters)



>mm_chr6_56305159_56305918
          Length = 760

 Score =  688 bits (356), Expect = 0.0
 Identities = 359/360 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgcagaaagatgaatgaaagccattatctacgacgttcagcttcatgttttggttgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgcagaaagatgaatgaaagccattatctacgacgttcagcttcatgttttggttgaa 260

                                                                       
Query: 61  ttactctcaagctttgtcataattttactatgtagaaaaacttcacatcgtactcattaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttactctcaagctttgtcataattttactatgtagaaaaacttcacatcgtactcattaa 320

                                                                       
Query: 121 ggttcattagtgttgtttaataacagctgtcaagaagactttaaataaggaacactctcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttcattagtgttgtttaataacagctgtcaagaagactttaaataaggaacactctcc 380

                                                                       
Query: 181 agtaaaagcctgaagaatgttaattccttacatagatttactattctttctccacaagta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtaaaagcctgaagaatgttaattccttacatagatttactattctttctccacaagta 440

                                                                       
Query: 241 gccctccattccctgcagaattcacctttcattacttatcaaatgctggtggtcacctcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gccctccattccctgcagaattcacctttcattacttatcaaatgctggtggtcacctcc 500

                                                                       
Query: 301 aaagttatcatagactgttttatatgcctcaggttaatcaatgatctatcttctcaaaag 360
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagttatcacagactgttttatatgcctcaggttaatcaatgatctatcttctcaaaag 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)