Query= MSMg01no054_f04.b1 MSMg01no054_f04.b1 CHROMAT_FILE:
MSMg01no054_f04.b1 PHD_FILE: MSMg01no054_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:29 2005
(486 letters)
>mm_chr6_76414922_76415808
Length = 887
Score = 874 bits (452), Expect = 0.0
Identities = 470/476 (98%), Gaps = 1/476 (0%)
Strand = Plus / Minus
Query: 12 gaattctactgctcc-caaccccaaatcatttcaaatgaatgcgtattgcattggctgcg 70
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattctactgctccaaaaccccaaatcatttcaaatgaatgcgtattgcattggctgcg 628
Query: 71 actcatctcttgggggtatttgcttgtttggttacaatacagtttcaataattgaggtgt 130
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 627 actcatctcttgggggtatttgcttgtttggttacaatacagcttcaataattgaggtgt 568
Query: 131 cttttttttccagtgaaatattacaatcaagtatggtcaatttaagtaactttgagttaa 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 cttttttttccagtgaaatattacaatcaagtatggtcaatttaagtaactttgagttaa 508
Query: 191 tgtaaagccagaatttgtgaatgctgaaattacaaaatgatttttaaagaaaatgcttca 250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 tgtaaagccagaatttgtgaatgctgaaattacaaaatgatttttaaagaaaatgcttca 448
Query: 251 ttgcatatagagcattcataacatagaattagaacgctaacgtatttgctgtaatagtta 310
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 ttgcatatagagcattcataacatagaattagaacgctaacgtatttgctgtaatagtta 388
Query: 311 ggagaaaataagtatatttttcttactcttattagttctatagctgaggtactgagatta 370
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ggagaaaataagtgtatttttcttactcttattagttctatagctgaggtactgagatta 328
Query: 371 aatgatgacgcaagacaaaatcatgtaaatttactatagtgaatgaagaaatctgaaggc 430
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatgatgaggcaagacaaaatcatgtaaatttactatagtgaatgaagaaatctgaaggc 268
Query: 431 tcaaagggttgcacagatctgggagactttatacatggtttgatggaattggtagt 486
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 267 tcaaagggttgcacagatctgtgagactttatacatggtttgatggaattggtagt 212
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 887
Length adjustment: 10
Effective length of query: 476
Effective length of database: 877
Effective search space: 417452
Effective search space used: 417452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no054_f04.g1 MSMg01no054_f04.g1 CHROMAT_FILE:
MSMg01no054_f04.g1 PHD_FILE: MSMg01no054_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:55:29 2005
(338 letters)
>mm_chr6_76307931_76308667
Length = 737
Score = 607 bits (314), Expect = e-178
Identities = 331/344 (96%), Gaps = 13/344 (3%)
Strand = Plus / Plus
Query: 1 agagagttcaaagcatgagagacaccattaactgaggccactgtaccatcaaatctgcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagagttcaaagcatgagagacaccattaactgaggccactgtaccatcaaatctgcgc 260
Query: 61 acatctcttttatcatgctttgaccggtgtttgtctcatctcccttgtcctcattatttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatctcttttatcatgctttgaccggtgtttgtctcatctcccttgtcctcattatttc 320
Query: 121 tcttgactgtaaagatctaatgcttcaacaaaatgctgggatatctaaagcacacagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttgactgtaaagatctaatgcttcaacaaaatgctgggatatctaaagcacacagaaa 380
Query: 181 gtgtcagtaaacaagaattcagagattttttt------gggggggggagagttccagaga 234
|||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct: 381 gtgtcagtaaacaagaattcagagatttttttttttttgg-------agagttccagaga 433
Query: 235 ttaaagttgagagaagaaaaaagggagtgttgccttcagtgacacaagacaacatatgct 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ttaaagttgagagaagaaaaaagggagtgttgccttcagtgacacaagacaacatatgct 493
Query: 295 ttgagcatgtccttcctctcagtagaccaaagagcctaaatgag 338
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 ttgagcatgtccttcctctcagtagaccaaagagcctaaatgag 537
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 737
Length adjustment: 9
Effective length of query: 329
Effective length of database: 728
Effective search space: 239512
Effective search space used: 239512
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
