BAC Information

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BAC

Clone NameMSMg01-054N23
Chromosome6 (Build37)
Map Location 139,958,942 - 139,959,283
singlet/doubletsinglet
Overlap genePlcz1
Upstream geneEG632971, LOC100043898, Pik3c2g
Downstream geneCapza3, LOC100042680, LOC100039020, LOC269810, Plekha5, Aebp2, EG664868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054N23.T7 (MSMg01no054_n23.b1)MSMg01-054N23.TJ (MSMg01no054_n23.g1)
ACCAG282692AG282693
length882700
length of high quality
(start - end)
175 (102 - 276)344 (77 - 420)
definitionCHROMAT_FILE: MSMg01no054_n23.b1 PHD_FILE: MSMg01no054_n23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:09 2005CHROMAT_FILE: MSMg01no054_n23.g1 PHD_FILE: MSMg01no054_n23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTNNNTNNNNNCNGGCCCGGCTGGCTTCCCCCCAACACCNT
CTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCATAATGTCCTAATGAAGAAGGTGGGGCTATAATATATGT
ATATGTATATATTATAGCCTATATGTGTGTGTGTATAATAGCCTCACCTT
ATAATGGATGGATAGATAGATAGATAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGATAGATGATATCTTCATTTTTTTTCTCTTTACCCTTT
TTTTATTACCTTTTTTATTTCCTTCTTTATTTTTTTCTTCTTCCTTCTTC
TATTTTTTTTTTATTTCATCACCTTTTTTCTTTGCATCTCTTCCTCTCCA
CACCCTTTTTATTACATTTTTCTTCTATCTTTCCCCCCCTCTACCATCCT
CCCTTTAACATCTTTTTCTTATTTTTTTTTTTTCCCCCCCCCCATTCTAT
TTTTTTATCTCCCCTTCTTCTTATGCTTTTCCTCCTTCGTCCTTTCCCAC
CCCTTTTTTTCTTTTCCCTTCCTCTTATCTTTTCTTTCTCAACTTCTTTA
TTTTTTTATTATTTTACTTTTCCATTCCACTCCATTTATTCACTTTCTCA
CTTTCTTTCTCATCGGATATAATTTGTATCGTTACTACGAATTAGATCAA
TGCTCCCTACATTCTTCTTTTTTATATTCTACTCTCTACTCTTCTTTTCA
TCTCTCCCTATCTCCTCTCTTTCTTATCACTCATCATCTTACTTTATTTT
TCCTATATTTCTATCTATACCTTACTATCCTTCTATTGCTTTTTCGTTCC
CATCTCTCTCCTCTTCTTATAACATTTCACAG
TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAGACTTAGTCCCACTTCCTCTT
TATTGTTTGTATGTTGGGCTATCTCTCAAGTTCACAGTGATGACTTGCTT
ATACATCTGTTTCATGTCCAACTGTTTCTTTGTAGGCACTAAAATTCAAA
ATATTAGTGAAAAACAGGAAAGTGGGAACCTTATCTGAAACCCACGAGAG
GATAGGAACCGACAAAAGTGGCCAAGTGCTAGAATGGAAAGAAGTCATCT
ATGAAGATGGTGATGAAGACTCAGGAATGGATCCAGAAACATGGGATGTC
TTCCTATCACGGATCAAGGAGGAGAAGGAAGCAGATCCCTCGACATTGAG
CGGAATAGCATGCGTCAACAAAAGGCTGAGAATAGGTTTCTGGAGAAAAG
TGATCAAAGTTTTCTAGTGCTCTTGGTGAAGAGCTGGAATAATTTTATAT
AAGGGGTCAGCTTCCTCTTCATGAAAACCTGAGTCCAATTTAAAATTGTA
CTTGGAAAGAAGTCAACAGAGGACAGAAACATTAGAAATCTGTCTCTTTT
TGTGGTAGCCTTTCCTAAGATACTTTCACTGCAGGAGACATTTATTATGA
GCTCTTGACTGTAGTAAGCATTTTACACAGTAGAAATCATGCACATGATA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_n23.g1 MSMg01no054_n23.g1 CHROMAT_FILE:
MSMg01no054_n23.g1 PHD_FILE: MSMg01no054_n23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:09 2005
         (344 letters)



>mm_chr6_139958742_139959485
          Length = 744

 Score =  630 bits (326), Expect = 0.0
 Identities = 338/342 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagacttagtcccacttcctctttattgtttgtatgttgggctatctctcaagttcaca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 542 ctagacttagtcccacttcctctttattgtttgtatgttgggctatttctcaagttcaca 483

                                                                       
Query: 61  gtgatgacttgcttatacatctgtttcatgtccaactgtttctttgtaggcactaaaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gtgatgacttgcttatacatctgtttcatgtccaactgtttctttgtaggcactaaaatt 423

                                                                       
Query: 121 caaaatattagtgaaaaacaggaaagtgggaaccttatctgaaacccacgagaggatagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 caaaatattagtgaaaaacaggaaagtgggaaccttatctgaaacccacgagaggatagg 363

                                                                       
Query: 181 aaccgacaaaagtggccaagtgctagaatggaaagaagtcatctatgaagatggtgatga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaccgacaaaagtggccaagtgctagaatggaaagaagtcatctatgaagatggtgatga 303

                                                                       
Query: 241 agactcaggaatggatccagaaacatgggatgtcttcctatcacggatcaaggaggagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 302 agactcaggaatggatccagaaacatgggatgtcttcctatcacggatcaaggaggagag 243

                                                     
Query: 301 ggaagcagatccctcgacattgagcggaatagcatgcgtcaa 342
           |||||||||||||||||||||||| ||||||||| |||||||
Sbjct: 242 ggaagcagatccctcgacattgagtggaatagcaggcgtcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space:   246225
Effective search space used:   246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)