BAC Information

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BAC

Clone NameMSMg01-054O17
Chromosome6 (Build37)
Map Location 53,427,454 - 53,427,745
singlet/doubletsinglet
Overlap genenone
Upstream gene1700094M24Rik, EG545841, Hibadh, Tax1bp1, Jazf1, LOC666259, LOC666516, D430007I03
Downstream geneCreb5, LOC384386, 1200009O22Rik, Cpvl, LOC666305, Chn2, LOC100042056, Prr15, EG640926, Wipf3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-054O17.T7 (MSMg01no054_o17.b1)MSMg01-054O17.TJ (MSMg01no054_o17.g1)
ACCAG282727AG282728
length743767
length of high quality
(start - end)
33 (195 - 227)296 (186 - 481)
definitionCHROMAT_FILE: MSMg01no054_o17.b1 PHD_FILE: MSMg01no054_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:13 2005CHROMAT_FILE: MSMg01no054_o17.g1 PHD_FILE: MSMg01no054_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTTTTTTTNTTTNNNNTTTTTTTTTATTTTGTGCGCCCGAGGACGTG
NTTACATCTATAATTGCGGCCGNAAANGANTCACTTTCGTAGCNGAGGNG
NGGAANNNNNTTTATCAGTACCAGGTGNATGNATAGGGAGTGGTAAAGAN
AATAGGNTNAGGAGTTAGTCTCGCCAGATAGAAATTNAGTNTNTGGAGGG
TATTAGTTGTGTGATATAGAGAAAATGANTTTGTNTNTTAGTAGTAAAAT
GGTATTNTAGTTNATTTTTCTCTTAGTGTGGTAAAANANCATGATGAAAT
TTTGTGAAGAAAGGGTTTATTTTTGGTTGNAAGTCCGAGGGGAAAATCCA
CTAATGGAGGAAAGTTTTTTTTTTTANANAAGCGGAAGCAGAGGCAACNA
AGAAGGGGTTTTGTCCCCCGCCCCGCCCACTAGGTCCTTCTCATCCAGCT
TTTTCTACAGACCAGAACCCCTGAAAAAAAAAGGTATTGCCCATAGGGAG
CTGGGCCTTCTCACGCCGATTGGAAATTAAGAAAATGCCTCACAGATATG
CTCACTGGTCAGTCTGATCAAGACAGCCTGAAGTTGAAACTCTCCCAGAT
AACTCTGATCTGCAGTTGACAGTTCTGTTCTAGTTAGTTCTAGAACAGAA
ATTGGCACTCGCAGGAGTGCTGTGTAAATGGGACAGAACTGATTTTTCTT
GTTTTGTGGGATATTTATGAAAGCGTTTAATAACTTTAAACTT
NNNTTTTTTTTTTANTTTTNCCCTCGGTCACTTCCCTTTGATTCCNTTTT
TTTTCCNNCCTCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTACAACGGGAATTCTTTCTGAAACAGAG
TCTGGAAATGTTAGATAATTTTAGATTATGACATTTGCAAACATCATCTG
TAATGACATGACGTCTACAGGATCAGAGTGGGGAAAGGCACATTGGGAAG
GCCCTTCACAGCCCATCTCGCTGAGTCAGAAGCCTCCCTTTGAAGGACAG
CTGCCAGGGATGACAGCCCTGGTGTGACTTAGGATGGTGTACCTCTGAAG
TCCTGTCCATCATCAGGGGCCTCTTTGTATTCGATAAATGAACAACTCTG
ATTCTTAAGGTTTCTGATTAATCCTGGCTGCTCACTTGCTTCATTTTAGC
AGGCGCTTCCTCTGAGAATTAAAGTGTGAAGTAACCTTGCAATCCAGAAC
ATCGAAGTGCTTGGACAGATTGCACAATGTTATTTTGGTTTGGTATTTTG
TTGTGCTAGAGGTTGAACCCAGGGCTTTGAGTATAACAACCAAGCATTCA
TCCACTGAGCAACAAACAGGATCCACTGTACATTTTTTATTGAGAAACAC
AATCTTATCTAAGTTGGCCAGGCCTGGGTTTCAACTTCCCTACTTTGGGC
CCAAAATAGTCTTTGAGGAATTCTAAAGTAGTTTGTGATTTATCGATTTT
GTGGAAACTCAGGCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no054_o17.g1 MSMg01no054_o17.g1 CHROMAT_FILE:
MSMg01no054_o17.g1 PHD_FILE: MSMg01no054_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:13 2005
         (296 letters)



>mm_chr6_53427250_53427945
          Length = 696

 Score =  503 bits (260), Expect = e-147
 Identities = 284/292 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   aacatcatctgtaatgacatgacgtctacaggatcagagtggggaaaggcacattgggaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aacatcatctgtaatgacatgacgtctacaggatcagagtggggaaaggcacattgggaa 264

                                                                       
Query: 65  ggcccttcacagcccatctcgctgagtcagaagcctccctttgaaggacagctgccaggg 124
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 265 ggcccttcacagcccatctcgctgagtcagaagcctccctttgaagcacagctgccaggg 324

                                                                       
Query: 125 atgacagccctggtgtgacttaggatggtgtacctctgaagtcctgtccatcatcagggg 184
           ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 325 atgacagccttggtgtgacttagaatggtgtacctctgaagtcctgtccatcatcaggga 384

                                                                       
Query: 185 cctctttgtattcgataaatgaacaactctgattcttaaggtttctgattaatcctggct 244
           ||||||||||  ||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 385 cctctttgtagccgataaatgaacaactctgattcttaaggtttctgaccaatcctggct 444

                                                               
Query: 245 gctcacttgcttcattttagcaggcgcttcctctgagaattaaagtgtgaag 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gctcacttgcttcattttagcaggcgcttcctctgagaattaaagtgtgaag 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)