Query= MSMg01no055_c16.b1 MSMg01no055_c16.b1 CHROMAT_FILE:
MSMg01no055_c16.b1 PHD_FILE: MSMg01no055_c16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:30 2005
(314 letters)
>mm_chr6_114426151_114426866
Length = 716
Score = 540 bits (279), Expect = e-158
Identities = 304/313 (97%), Gaps = 4/313 (1%)
Strand = Plus / Minus
Query: 5 gaattctggggtgacgagcatgtgccaccatgcccagttttatgcagtcctggggacaga 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gaattctggggtgaggagcatgtgccaccatgcccagttttatgcagtcctggggacaga 583
Query: 65 tcccatggcctcctgaatgctaggcgatttccc-aggtgctgccaactgagccacatccc 123
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 582 tcccatggcctcctgaatgctaggcgatttcccga-gtgctgccaactgagccacatccc 524
Query: 124 cacgccaagcatggatttgtcaccagtcagatcttatctggt--aaagccaggagttacc 181
||| || |||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 523 cacacccagcatggattcgtcaccagtcagatcttatctggtaaaaagccaggagttacc 464
Query: 182 tgagaaatttaagcccttttttcatggaaagcacataacaagaggtagtttccacataat 241
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 tgagaaatttaagctcttttttcatggaaagcacataacaagaggtagtttccacataat 404
Query: 242 ctaaattaaatgccatccatctttctcaaaggtaatgatctgacgaaaacctgcaatggt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 ctaaattaaatgccatccatctttctcaaaggtaatgatctgacgaaaacctgcaatggt 344
Query: 302 ggcttcagatgta 314
|||||||||||||
Sbjct: 343 ggcttcagatgta 331
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 716
Length adjustment: 9
Effective length of query: 305
Effective length of database: 707
Effective search space: 215635
Effective search space used: 215635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no055_c16.g1 MSMg01no055_c16.g1 CHROMAT_FILE:
MSMg01no055_c16.g1 PHD_FILE: MSMg01no055_c16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:30 2005
(555 letters)
>mm_chr6_114338682_114339636
Length = 955
Score = 1040 bits (538), Expect = 0.0
Identities = 553/560 (98%), Gaps = 5/560 (0%)
Strand = Plus / Plus
Query: 1 tgcttcttctaggcagctgagcttatcagagactctcagcagtcttgactgtttatatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 tgcttcttctaggcagctgagcttatcagagactctcagcagtcttgactgtttatatac 255
Query: 61 tcttggtcaagcaggagcctagccttcctccaggaagtccctagtcagtttcagggactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcttggtcaagcaggagcctagccttcctccaggaagtccctagtcagtttcagggactt 315
Query: 121 cctggagctactttgacttgtttacttccggtcttaaggagcttcctatcattttgcctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cctggagctactttgacttgtttacttccggtcttaaggagcttcctatcattttgcctc 375
Query: 181 cccttagagcagtgacacacaaccttcctaatgccgggaccctttaatagagaacgtcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 cccttagagcagtgacacacaaccttcctaatgccgggaccctttaatagagaacgtcct 435
Query: 241 tctgttttacc-c----tctttaagtttccctccaacatggaaggtttaatcttggagaa 295
||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 tctgttttacctccccatctttaagtttccctccaacatggaaggtttaatcttggagaa 495
Query: 296 aactgctgcatgatgtctgctgactgccttgcttcttgagctcatggcctgccacatagc 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496 aactgctgcatgatgtctgctgactgccttgcttcttgagctcatggcctgccacatagc 555
Query: 356 taagggtgtgtgggacttcctaagagcaaagtgccatgctctttcgaaaggttttactac 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 taagggtgtgtgggacttcctaagagcaaagtgccatgctctttcgaaaggttttactac 615
Query: 416 tgtgtaggctgggctgtctctctgcaggaaaataggcatacacagtccaactaattccaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 tgtgtaggctgggctgtctctctgcaggaaaataggcatacacagtccaactaattccaa 675
Query: 476 gcttccctgggacttattcaggggctcccaggtgaggtctctgtctctcatacattctct 535
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 676 gcttccctgggacttagtcaggggctcccaggtgaggtctctgtctctcagacattctct 735
Query: 536 agcaccccaggctgtgaatg 555
||||||||||||||||||||
Sbjct: 736 agcaccccaggctgtgaatg 755
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
