BAC Information

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BAC

Clone NameMSMg01-055D10
Chromosome6 (Build37)
Map Location 100,174,942 - 100,175,220
singlet/doubletsinglet
Overlap genenone
Upstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
Downstream geneRybp, Shq1, LOC625221, BC049816, Ppp4r2, EG545870, LOC100043321, Pdzrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-055D10.T7 (MSMg01no055_d10.b1)MSMg01-055D10.TJ (MSMg01no055_d10.g1)
ACCAG282942AG282943
length727730
length of high quality
(start - end)
283 (68 - 350)176 (77 - 252)
definitionCHROMAT_FILE: MSMg01no055_d10.b1 PHD_FILE: MSMg01no055_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:34 2005CHROMAT_FILE: MSMg01no055_d10.g1 PHD_FILE: MSMg01no055_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:56:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAA
TTCATTCTTCTCGTCACAAAGCCTTGGAAACATCTGATCAAAGCAAGGAT
CTTGGATGCGCAATGCTTCTCTCCAAACAACAGAAGCAGTTTGTATCTAG
TACTCGGGCTCAACAAGTTTGCCCTTGCTCTGTTCACTAAAGCCTTCCCT
AGCATCGTATTAGTTGATTACTTGGTGGTTTTGATTTTTTTTTTTTAAAG
CAGGGTGAACAAAAGGGAATGGTTTCCTTTCTCTGGAGGACTTCTCTAGG
AGTTTTTGCGATTCTTTCAGCTACTGTTCTAATACAACCTAACTGGCAAG
TGGTTTGTTTGGCATACCGCCTGCCTAGCCTGCATGAAGCCCCAAGCTCA
CTCCTCAGCAAGTCCTGAGAGTTAAATGTCCAGCGTTCCATGTTGGCAGG
TACTTAAATGGCTAATTCCCCACCTTCAGAATTAAATATGTGTGTGTGGC
CGCATGAGACGAGAGTTTTATTACGAACAAACTTTATTCTAGAGGCTCGT
AGCCTCTTCATTACTATCTTTATTGAAATATTAATCTAATCATAACATCC
CCCAATGTTTTTTTCATCTATTTTCAATCAGCTCTCTTATTTCCTCCCCC
TCTATTGTTTCCACCCTCCCCATTCCCCACCCTATCTCCCTCATACAGTT
TTATTATACTAACTGCGCTCTAAACAC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAACCTGTAGCATTTCAGACAAGTG
TCATTGGTCAAGAGCAGACAGCCCACATCCTTGTATAAGTGTATATCCTA
CACGTGTGTGTGCTTGTGTGTGTGTGTGTGCCCATGCTCATATTGTGTTT
TATCACCATATATTCTGTTTTATCACCCTCCACCTTATCTTCTTCCTTTG
ATATACTCTTTCGCTGATCCTGGAGCAACAACAAGCCCTAATGACCCTCC
TGTCTCCATCCCACACAGTGCTGTTTTTATAGGCAGACAAAGCTATGTCT
GGCTTTTTATGTTTTTGCTGCGACCCCCCTCCAGGTCTTCCTTTACCCAA
TAAGCACTCTCCAACCTCACCACCTTGCCAGACTCCTCCCCCCATTTCTA
ATACAAAAAACGTCTCTCCCTCCCACGTAAGCAAGTGTGTTTTGAGTTCT
CACACTGTCTATGCTATACCTAAGTACTCCAACTCATGACTGTACTGAAA
AGCTCATTGTTCTGATTCTTGGATTCCAAGTGCCCAACTCCCCTATTTCT
TTACACACACCCCTTTGGACCTATTCTGATTGCGAACTTACGGCTATATC
TCCTACTCATCCTGCCTCATATGACCCCCCCGAAGTCTGATGTTCACATA
TTATATTCTTTCCCTTTCCTCTCGCACCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no055_d10.b1 MSMg01no055_d10.b1 CHROMAT_FILE:
MSMg01no055_d10.b1 PHD_FILE: MSMg01no055_d10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:56:34 2005
         (283 letters)



>mm_chr6_100174742_100175424
          Length = 683

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagccttggaaacatctgatcaaagcaaggatcttggatgcgcaatgcttctctccaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagccttggaaacatctgatcaaagcaaggatcttggatgcgcaatgcttctctccaaa 260

                                                                       
Query: 61  caacagaagcagtttgtatctagtactcgggctcaacaagtttgcccttgctctgttcac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caacagaagcagtttgtatctagtactcgggctcaacaagtttgcccttgctctgttcac 320

                                                                       
Query: 121 taaagccttccctagcatcgtattagttgattacttggtggttttgatttttttttttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaagccttccctagcatcgtattagttgattacttggtggttttgatttttttttttta 380

                                                                       
Query: 181 aagcagggtgaacaaaagggaatggtttcctttctctggaggacttctctaggagttttt 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagcagggtgaagaaaagggaatggtttcctttctctggaggacttctctaggagttttt 440

                                                  
Query: 241 gcgattctttcagctactgttctaatacaacctaactgg 279
           |||||||   |||||||||||||||||||||||||||||
Sbjct: 441 gcgattcaagcagctactgttctaatacaacctaactgg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)