BAC Information

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BAC

Clone NameMSMg01-056G18
Chromosome6 (Build37)
Map Location 49,367,611 - 49,368,212
singlet/doubletsinglet
Overlap geneStk31
Upstream geneZfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik
Downstream geneLOC384383, LOC666210, Npy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056G18.T7 (MSMg01no056_g18.b1)MSMg01-056G18.TJ (MSMg01no056_g18.g1)
ACCAG283836AG283837
length720709
length of high quality
(start - end)
290 (60 - 349)602 (73 - 674)
definitionCHROMAT_FILE: MSMg01no056_g18.b1 PHD_FILE: MSMg01no056_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:05 2005CHROMAT_FILE: MSMg01no056_g18.g1 PHD_FILE: MSMg01no056_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTAA
TACACACCAAAAATAAAATGAGGGGAAAAAAATCAAAGGTGAGTGGAAAA
TCCACCAGAGATCCAGAAGTCATTAAAAAAAATTAAACAGAATTCTTAGA
GCTAAAACTTCAGCGAATGAAATAAGAAACACAAGGAGAGCTTCCAAGAT
AGGCCACACCAAGGAAGAGAAAGAAATTCTGAACCAGAAGATGGATCTTT
TAAATTATCCAGTTATTGAGACAAAGGGCAAAGAAGAAAACAGAATGAAG
AAGCTACCAGACTTATGACCCATTACGAAGCAAACTGGTATTTCAGTGCT
GGAATTCCAGAGGCCACAAAAAGGAGGAAAGTCTCCAAGAAACGATCTTC
ATGAACCAAACACCCAAACATTCCAAAACTCCAAATACAAATGCACATTT
AGATGTAAGATGCTTAAAGGACCAACTAGGTCCAACCAAAGCAGACAATA
TATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACA
CATACCTACCTATTATCGTACAATATCATAAAAATAATCTCAATACTATA
AAGCAGAGGATATTATCTTCCATATAATTATAACTTTCTTTTATGACTTT
ATGTTCCCAATAATTCCCTCGGATGAAATCTGGGGAACGACCTATGTCCA
ATAGGTCCCTTGTATTTGTG
NACAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTACACACGGAATTCAGTTCTTAGGCTTTTGGAATCCT
TAACAGAGCGTATGGTTTTGTGAATGATCTTACATAATTTTTGTTTTTTT
CCTCATCAAACACTTGTTCCTCTGTTCTTTAGCAGGGATGTTTTCCTTAA
AAGCCAGTTAGAAAATATAATTGTTCTTGAATTATTTAAAGTTCCCTTGC
TAACTTTTCATTTTATTCTTTGAACATCTTTAACAAAAATAAAAATTGTC
CCCAAATATTAATTAATGGAGTACATGCCTAGTATGCATGAGGCTCTGGA
TGCAATCTCCATCCTCTTAAGGAAAAAAAATGATATTTTTCCCCTTCTGG
CTGTACGAATATTTTTCATGTGTTTAAGAGATCTTTTGTGTGAAAGTTTG
TGGTGAGATTTTAAGGAATTAGGATTTTAAGGTGCTCTGTTAAGGAGTTC
ATTTCTTTTAAAATATCTCTTTTTTTTTGGCTTTTTTTTTTCCTAGTGCT
TGCAGGGAGGAGGGTGTCAAACCTAAGGTCTTAATGCATGCAATGTATAT
ACTTTACCAATTGATCTCTACCCTTAATATGTATTTTTAATAATTTAACT
GGTCAAATAATTGTATATACTTCTAAGGTAAGGTATGTTTCAATTCATGT
GCGTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_g18.g1 MSMg01no056_g18.g1 CHROMAT_FILE:
MSMg01no056_g18.g1 PHD_FILE: MSMg01no056_g18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:05 2005
         (602 letters)



>mm_chr6_49367411_49368412
          Length = 1002

 Score = 1135 bits (587), Expect = 0.0
 Identities = 599/603 (99%), Gaps = 2/603 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcagttcttaggcttttggaatccttaacagagcgtatggttttgtgaatgatctta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcagttcttaggcttttggaatccttaacagagcgtatggttttgtgaatgatctta 260

                                                                       
Query: 61  cataatttttgtttttttcctcatcaaacacttgttcctctgttctttagcagggatgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cataatttttgtttttttcctcatcaaacacttgttcctctgttctttagcagggatgtt 320

                                                                       
Query: 121 ttccttaaaagccagttagaaaatataattgttcttgaattatttaaagttcccttgcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccttaaaagccagttagaaaatataattgttcttgaattatttaaagttcccttgcta 380

                                                                       
Query: 181 acttttcattttattctttgaacatctttaacaaaaataaaaattgtccccaaatattaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acttttcattttattctttgaacatctttaacaaaaataaaaattgtccccaaatattaa 440

                                                                       
Query: 241 ttaatggagtacatgcctagtatgcatgaggctctggatgcaatctccatcctcttaagg 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 ttaatggagtacatgcctagtatgcatgaggttctggatgcaatctccatcctcttaagg 500

                                                                       
Query: 301 aaaaaaaa-tgatatttttccccttctggctgtacgaatatttttcatgtgtttaagaga 359
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaaaaaatgatatttttccccttctggctgtacgaatatttttcatgtgtttaagaga 560

                                                                       
Query: 360 tcttttgtgtgaaagtttgtggtgagattttaaggaattaggattttaaggtgctctgtt 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcttttgtgtgaaagtttgtggtgagattttaaggaattaggattttaaggtgctctgtt 620

                                                                       
Query: 420 aaggagttcatttcttttaaaatatctctttttttttggcttttttttttcctagtgctt 479
           ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct: 621 aaggagttcatttcttttaaaatatttctttttttt-ggcttttttttttcctagtgctt 679

                                                                       
Query: 480 gcagggaggagggtgtcaaacctaaggtcttaatgcatgcaatgtatatactttaccaat 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gcagggaggagggtgtcaaacctaaggtcttaatgcatgcaatgtatatactttaccaat 739

                                                                       
Query: 540 tgatctctacccttaatatgtatttttaataatttaactggtcaaataattgtatatact 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgatctctacccttaatatgtatttttaataatttaactggtcaaataattgtatatact 799

              
Query: 600 tct 602
           |||
Sbjct: 800 tct 802


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1002
Length adjustment: 10
Effective length of query: 592
Effective length of database: 992
Effective search space:   587264
Effective search space used:   587264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)