BAC Information

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BAC

Clone NameMSMg01-056L09
Chromosome6 (Build37)
Map Location 35,299,931 - 35,416,610
singlet/doubletdoublet
Overlap genenone
Upstream geneAkr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm, LOC100039184, Cald1, Agbl3, Tmem140, 3110062M04Rik, 9530020G05Rik, Stra8, 2010107G12Rik, Cnot4, Nup205, 1810058I24Rik, Slc13a4, BC064033, 1700065J11Rik
Downstream geneMtpn, LOC100039312, LOC100039327, 9330158H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056L09.T7 (MSMg01no056_l09.b1)MSMg01-056L09.TJ (MSMg01no056_l09.g1)
ACCAG284053AG284054
length711711
length of high quality
(start - end)
191 (129 - 319)244 (74 - 317)
definitionCHROMAT_FILE: MSMg01no056_l09.b1 PHD_FILE: MSMg01no056_l09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:27 2005CHROMAT_FILE: MSMg01no056_l09.g1 PHD_FILE: MSMg01no056_l09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,299,931 - 35,300,115)(35,416,367 - 35,416,610)
sequence
TCTCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAAGGGTATCGAAATCATCTTGCTGCTGCAAACTCTCATGTCCA
CTGTTCCGATAAAGGATCCCAGCCCGTGACAAGGAGATAATTTACTTGAA
ATTAACGAGCAAAGCTAATTCTGGCAGTAGATTTGGGCAGGGACAGAGTG
TACCAGAGCAGAGCGCTGGCAAGTGTTTCTAACCCTCTGGCTTGGCTTCT
GATCTAGGGAGCTTCCCCAGACATGGTCGTGAGTTTTGGTCTCTGAATTG
CCTGTTGAGCGGCAAATAGACTTTCAGATTTGGGGCTCTGGTGTCTGTTG
AGAGCCCATAATGATTTTCTCTGGCCTCTCCTTTTCCTCACTGGCTCCAG
TTTTATAAGATATGGGAGATAATTAAAGTCTGGCTTTCTGAGGGCATAGG
TTTTTGGGTCCAAAACTTCATTCTTCACACTTCCCACAGGGTCCCTCCCC
TGTACAGCGGGATGCCTCCCTTTTCTCTCTCTGGGTTCAAGAATGGTTGG
GTCCCCTGGTTATGGCCTTCCTGCTTTGTTTTCTCTGGGTAGCGGCTGAC
TTTACCTCTCTGCTACCTGCTATGACCTCCCCACCATCATCCCCATCTGA
CCATGTTCCTGCCTCGCATCTAATTGTTTGGTATGCCCTATCCCACCACC
TCCAGCTGCGT
CACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTAATCCCAGATTGTCATTAGAAAAC
ATAGTTTTAAACTTGAAGTTCCCGCAATACAGTAATTGGTTAAAGTGAAT
CAAGTCCACCTCCCACTGTGAGCATGAATAAATGTCATAAACACAATATA
GAGTTAAAAATAGAAAGCAAAGTCATATACTACAGTTTAGAATTTTAAAT
TTACTAAAATACCAGTCTAGAATGTTCACAGATACACAGGTATAATTTGG
TAAAGAAATGTGCATTATTCTGATAAGAACCACATTAAAGACAGGAATAT
CTCTAAAGATTTTTATTACCACCCCCTATCTACAATGAGAATTTCCCGAT
GTGTCTAATATATTTTGTTTCTTTAAAAAAAGAAAAGTACCTAGAATAAC
ACACAGGGACTGGTGAGGTGGCTCAGTGACTGGAAACACTTGCTGTTCTA
TAAGATAGCCTGATGTCAAATTCTACCGCACTCTTACAGAAGCCAAGTAT
GGTCACCCTTTGTCTGTACCTGCCAGTGCTGAGGGCCAGCTAGAGCCCAC
CAGTTGAGTGTCCACCCAGCGAATTCCAAGCATCTAGCTCCGTGTTTCAG
CGATAGAATCCGCCTCATAAACTAATGTATATTTTAATACATTGAGAACG
TCTACATAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_l09.b1 MSMg01no056_l09.b1 CHROMAT_FILE:
MSMg01no056_l09.b1 PHD_FILE: MSMg01no056_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:27 2005
         (191 letters)



>mm_chr6_35299728_35300318
          Length = 591

 Score =  342 bits (177), Expect = 6e-99
 Identities = 183/185 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   aggagataatttacttgaaattaacgagcaaagctaattctggcagtagatttgggcagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aggagataatttacttgaaattaacgagcaaagctaattctggcagtagatttgggcagg 263

                                                                       
Query: 64  gacagagtgtaccagagcagagcgctggcaagtgtttctaaccctctggcttggcttctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacagagtgtaccagagcagagcgctggcaagtgtttctaaccctctggcttggcttctg 323

                                                                       
Query: 124 atctagggagcttccccagacatggtcgtgagttttggtctctgaattgcctgttgagcg 183
           | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 agctagggagcttccccagacatggccgtgagttttggtctctgaattgcctgttgagcg 383

                
Query: 184 gcaaa 188
           |||||
Sbjct: 384 gcaaa 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no056_l09.g1 MSMg01no056_l09.g1 CHROMAT_FILE:
MSMg01no056_l09.g1 PHD_FILE: MSMg01no056_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:27 2005
         (244 letters)



>mm_chr6_35416167_35416810
          Length = 644

 Score =  441 bits (228), Expect = e-128
 Identities = 240/244 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaatcccagattgtcattagaaaacatagttttaaacttgaagttcccgcaatacagt 60
           |||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||
Sbjct: 444 tctaatcccagattgtcattagaaaacatagttttaaacttgaagttaaagcaatactgt 385

                                                                       
Query: 61  aattggttaaagtgaatcaagtccacctcccactgtgagcatgaataaatgtcataaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aattggttaaagtgaatcaagtccacctcccactgtgagcatgaataaatgtcataaaca 325

                                                                       
Query: 121 caatatagagttaaaaatagaaagcaaagtcatatactacagtttagaattttaaattta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caatatagagttaaaaatagaaagcaaagtcatatactacagtttagaattttaaattta 265

                                                                       
Query: 181 ctaaaataccagtctagaatgttcacagatacacaggtataatttggtaaagaaatgtgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctaaaataccagtctagaatgttcacagatacacaggtataatttggtaaagaaatgtgc 205

               
Query: 241 atta 244
           ||||
Sbjct: 204 atta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)