Query= MSMg01no057_f20.b1 MSMg01no057_f20.b1 CHROMAT_FILE:
MSMg01no057_f20.b1 PHD_FILE: MSMg01no057_f20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:17 2005
(546 letters)
>mm_chr6_20349800_20350744
Length = 945
Score = 940 bits (486), Expect = 0.0
Identities = 528/542 (97%), Gaps = 1/542 (0%)
Strand = Plus / Minus
Query: 5 gaattcataaattaatagctgaacagtctcataactcataataagttctactttatagag 64
|||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 745 gaattcataaattaatagttgaacagtctcataactcataataagttctgctttatagaa 686
Query: 65 tgatataatgcctttccaatgctatcctttatatcagacagaaagaagaatgattgatta 124
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgatataatgcctttcctatgctatcctttatatcagacagaaagaagaatgattgatta 626
Query: 125 tagaatcaccactattggaagccacctgttctttatgatgaatattggcctgagtaacct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagaatcaccactattggaagccacctgttctttatgatgaatattggcctgagtaacct 566
Query: 185 atgcttgcaatttgtaattgtagaacattatggatgaaagaatgaagtgcctataatttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atgcttgcaatttgtaattgtagaacattatggatgaaagaatgaagtgcctataatttc 506
Query: 245 agatgagtgcctttgaaaaccctaagcgtgtaaagcactacctgtctatgaaataataca 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 505 agatgagtgcctttgaaaaccctaggcgtgtaaagcactacctgtctatgaaataataca 446
Query: 305 ttccttggtttcattgggataaacaccttggcacaaattcaaatttttagtgttagctgt 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttccttggtttcattgggataaacaccttggcacaaattcaaatttttagtgttagctga 386
Query: 365 atattgagctgcctagtcagagtgttgtaaatctttaatcaaaaactttaaaaaaatatt 424
||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 385 atattgagctgtttagtcagagtgttgtaaatctttaatcaaaaacttt-aaaaaatatt 327
Query: 425 acctcatcctaattaaaaattgtctataacgcgtaacatttagaatcattcttaatgtgt 484
|||| |||||| |||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 326 accttgtcctaactaaaaattgtctataatgtgtaacatttagaatcattcttaatgtgt 267
Query: 485 aaagtataagatatggagttcaatgttaccttgagtgaacagtgtacacacacacacaca 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 aaagtataagatatggagttcaatgttaccttgagtgaacagtgtacacacacacacaca 207
Query: 545 ca 546
||
Sbjct: 206 ca 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 546
Length of database: 945
Length adjustment: 10
Effective length of query: 536
Effective length of database: 935
Effective search space: 501160
Effective search space used: 501160
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_f20.g1 MSMg01no057_f20.g1 CHROMAT_FILE:
MSMg01no057_f20.g1 PHD_FILE: MSMg01no057_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:17 2005
(324 letters)
>mm_chr6_20240665_20241387
Length = 723
Score = 592 bits (306), Expect = e-173
Identities = 318/322 (98%), Gaps = 1/322 (0%)
Strand = Plus / Plus
Query: 1 actcataaagtcattatttttgacaatgttgttgccaaaaggtagaattttgctttgttt 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 actcataaagtcattatttttgacaatgttgttgccaaaaggtagaattttgttttgttt 260
Query: 61 ggctttgtttcccatgtaaaagatcaaaagaaacacagtgaaacttacttattacaatgc 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 ggctttgtttcccatgtaaaagatcaaaagaaacacagtgacacttacttattacaatgc 320
Query: 121 ctgaatatttttttattaaaatagtggaatgatgaattaaagggaacagataaataatta 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgaatatttttt-attaaaatagtggaatgatgaattaaagggaacagataaataatta 379
Query: 181 aaaatgcacactttcaaagtgagtcagatgtgagtggcatcaatctacactaatgtttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaatgcacactttcaaagtgagtcagatgtgagtggcatcaatctacactaatgtttct 439
Query: 241 aaaaacaataaaatgaaaaatatttaagtaataaaatgtagtaaatataacgctaataaa 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaaacaataaagtgaaaaatatttaagtaataaaatgtagtaaatataacgctaataaa 499
Query: 301 ttttgcattatgctaaatttag 322
||||||||||||||||||||||
Sbjct: 500 ttttgcattatgctaaatttag 521
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 723
Length adjustment: 9
Effective length of query: 315
Effective length of database: 714
Effective search space: 224910
Effective search space used: 224910
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
