Query= MSMg01no057_f24.b1 MSMg01no057_f24.b1 CHROMAT_FILE:
MSMg01no057_f24.b1 PHD_FILE: MSMg01no057_f24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:18 2005
(472 letters)
>mm_chr6_110495358_110496229
Length = 872
Score = 833 bits (431), Expect = 0.0
Identities = 466/489 (95%), Gaps = 20/489 (4%)
Strand = Plus / Minus
Query: 3 catgagcactgatatcgtcatgaagag-aaagctaattgctctgataattgtcagagaaa 61
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 622 catgagcactgatatcgtcatgaagagtaaagctaattgctctgataattgtcagagaaa 563
Query: 62 gctgcaaagatttcaacttaataaattctgaacgttgaggtaaatggagaaaaaaatcaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 gctgcaaagatttcaacttaataaattctgaacgttgaggtaaatggagaaaaaaatcaa 503
Query: 122 gtttgcatttttttcaatatagaatgcataacattgccatgcatacatgttttacgggac 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtttgcatttttttcaatatagaatgcataacattgccatgcatacatgttttacgggac 443
Query: 182 catggtaacagagtggagttctgtcctctgctacagtctccatacatttcatacactggc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 catggtaacagagtggagttctgtcctctgctacagtctccatacatttcatacactggc 383
Query: 242 agctctgtattacatcttctattaaaagcacaagtgtgcccccttctgaataaaagaaat 301
||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 agctctg-aatacatcttctattaaaagcacaagtgtgcccccttctgaataaaagaaat 324
Query: 302 attgagacctatatctgtacttcaaataacaatgtctctcctcttgcgatcaaactgaat 361
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 323 attgagacctatatctgtacttcaaataacaatgtctctcctcttgggatcaaactgaat 264
Query: 362 aaataaatgttggcaagtatcagttgttagtgaatcctttgggaaatactataagtgata 421
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 aaataaatgttggcaaatatcagttgttagtgaatcctttgggaaatactataagtgata 204
Query: 422 g------------------acacacacacacacacacacagagagagagagagagagaga 463
| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gacacacacacacacacacacacacacacacacacacacagagagagagagagagagaga 144
Query: 464 gagagagag 472
|||||||||
Sbjct: 143 gagagagag 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 12
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 472
Length of database: 872
Length adjustment: 10
Effective length of query: 462
Effective length of database: 862
Effective search space: 398244
Effective search space used: 398244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no057_f24.g1 MSMg01no057_f24.g1 CHROMAT_FILE:
MSMg01no057_f24.g1 PHD_FILE: MSMg01no057_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:18 2005
(289 letters)
>mm_chr6_110387421_110388109
Length = 689
Score = 536 bits (277), Expect = e-157
Identities = 286/289 (98%)
Strand = Plus / Plus
Query: 1 ggcagacaggtagccaatcaagaactggaaaccatgtaccctgtggatgctcttaggccc 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 ggcagacaggtagccaatcaagaacttgaaaccatgtaccctgtggatgctcttaggccc 260
Query: 61 tgaagtagcagtgtgctgggagcctaagtatgtctttctttcttctctgaatagactgta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagtagcagtgtgctgggagcctaagtatgtctttctttcttctctgaatagactgta 320
Query: 121 caagaacatttagcaatgtattgacatataacaaaatcatcatgctctcactaatttgga 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caagaacatttagctatgtattgacatataacaaaatcatcatgctctcactaatttgga 380
Query: 181 aaattctgggagaaaaatatctcagttaactattgttttcttggttacctgctggaagaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaattctgggagaaaaatatctcagttaactattgttttcttggttacctgctggaagaa 440
Query: 241 attgagttatgtacagttttgattactaaaaatcattgtaaagattggg 289
||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgagttatgcacagttttgattactaaaaatcattgtaaagattggg 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space: 190400
Effective search space used: 190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
