BAC Information

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BAC

Clone NameMSMg01-057M20
Chromosome6 (Build37)
Map Location 118,299,582 - 118,300,117
singlet/doubletsinglet
Overlap genenone
Upstream geneEG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik
Downstream geneBms1, Zfp248, Zfp9, Ankrd26, Cacna1c, Dcp1b, Cacna2d4, Lrtm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-057M20.T7 (MSMg01no057_m20.b1)MSMg01-057M20.TJ (MSMg01no057_m20.g1)
ACCAG284870AG284871
length680667
length of high quality
(start - end)
533 (61 - 593)508 (55 - 562)
definitionCHROMAT_FILE: MSMg01no057_m20.b1 PHD_FILE: MSMg01no057_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:52 2005CHROMAT_FILE: MSMg01no057_m20.g1 PHD_FILE: MSMg01no057_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:59:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TGCGGCCGCTAAACGACTCCTATATTCAGAGAATCCGCGGAATTCTAACT
AATTGCACTTTCAAGATATATAGCACACCATTAAAAAAAATCTACAATTC
ACAGCCATCAGAAGACACAAGTTGCATTCAAAAGGGGTGGAAAAGAGTTT
CGGCAAGGTCATGGCTTTCATTTTTAAAAAGTCAAAGAAAGAGATACTAT
TCCCGGTACAGAAGGCCTCTAGATTGCACCAAACAGCCTCCCTTGGCCAT
AGTGTTGCTGATGCTAAATACACAGAACAATATTCATTGGCAGCAGCAAG
AGAGAGCCATGGAGCTGTGCATGGCGACAGACCCCAGACTCACAGCACCT
GTCAACAGACATGTGGAAAGAAAGGAGGGCTTGGAGGCAAGGATTCACTT
CCAATTCTGAACCACAACACCTAGACAGGGTTCTGGTAAGATGACAGACC
AGAGGCTGCCTCAGTGTGAGTTAGTGAAAGAGTCAAAATGAGAAGAAAAA
CAAGAATACAGAGGACTGATCCAAATGGAAGGATACAAAACCATAAATAT
GCAATCTGTAAAACGAGGGAGCAGATGACGGGTATGAATGTGAAGAACTC
CTTGGCAGCAGCGCCAGAAGGTGGATTCTGGCTAAGAGACAAGCTCTGCT
AAGAAGTGCAAAGCCCAGGTGTCTGGGGCA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGAATATGCGCTATGTTGAAGTCTTCTCTGTGAATGAAGAGTTTAT
TAATAAGGAGCCAAGGTTTATAGTTGTAATCCCAGCATTTGGGAGACTGA
AGGCAGAGAATGGCCAAAAGTTAGAGCCAGCTTGGGCTGGATAGTCAGTT
CCAAGCCAAGCTGTGAAAAACTTAAAGCAAAGTAAAGCAAAACCAAATCT
AACTGACAAAGCCCAAGTGCCGGCACGATGGGTCAGGCAGATAAAAGCTC
TTGCCACCAAGCCTGACCTAAACTTGATTCCGGGAATCTGTGTGCTGAAA
GGAGAGCACTGACTCCTGAGAGCGGTCCTCTGACTCACGTGCACACACGC
ACATGCACACACACACATCCACATGCTCACGTGCACACACAGATTCACAC
AGATTCACATGTGCACATACACGCAGAGACACACAGACTCACACATGCAC
ACTCATGTACACACACACATGTGTGCACACACACAGAGACACATGCACAG
GTACACATGCAAAATACCCCCAGTAGACCCCCAAGAGAAATAATTTTTTA
ATCAAGTAAAAACAAAAAGCCTTTTCTTTCTTTTCTTTTTTTTTAAATTC
TTTTCCAAGTCTGAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no057_m20.b1 MSMg01no057_m20.b1 CHROMAT_FILE:
MSMg01no057_m20.b1 PHD_FILE: MSMg01no057_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:59:52 2005
         (533 letters)



>mm_chr6_118299382_118300317
          Length = 936

 Score =  998 bits (516), Expect = 0.0
 Identities = 530/536 (98%), Gaps = 3/536 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaagatatatagcacaccattaaaaaaaatctacaattcacagccatcagaagacacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaagatatatagcacaccattaaaaaaaatctacaattcacagccatcagaagacacaa 260

                                                                       
Query: 61  gttgcattcaaaaggggtggaaaagagtttcggcaaggtcatggctttcatttttaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttgcattcaaaaggggtggaaaagagtttcggcaaggtcatggctttcatttttaaaaa 320

                                                                       
Query: 121 gtcaaagaaagagatactattcccggtacagaaggcctctagattgcaccaaacagcctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtcaaagaaagagatactattcccggtacagaaggcctctagattgcaccaaacagcctc 380

                                                                       
Query: 181 ccttggccatagtgttgctgatgctaaatacacagaacaatattca---ttggcagcagc 237
           |||||||||||||||||||||||||||||||||||||||||||||    |||||||||||
Sbjct: 381 ccttggccatagtgttgctgatgctaaatacacagaacaatattctctcttggcagcagc 440

                                                                       
Query: 238 aagagagagccatggagctgtgcatggcgacagaccccagactcacagcacctgtcaaca 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagagagagccatggagctgtgcatggcgacagaccccagactcacagcacctgtcaaca 500

                                                                       
Query: 298 gacatgtggaaagaaaggagggcttggaggcaaggattcacttccaattctgaaccacaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||
Sbjct: 501 gacatgtggaaagaaaggagggcttggaggcaaggattcacttccaattctgaaagacaa 560

                                                                       
Query: 358 cacctagacagggttctggtaagatgacagaccagaggctgcctcagtgtgagttagtga 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacctagacagggttctggtaagatgacagaccagaggctgcctcagtgtgagttagtga 620

                                                                       
Query: 418 aagagtcaaaatgagaagaaaaacaagaatacagaggactgatccaaatggaaggataca 477
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagagtcaaaatgagaagaaaaacaagaatacagaggactgatccaaatggaaggataca 680

                                                                   
Query: 478 aaaccataaatatgcaatctgtaaaacgagggagcagatgacgggtatgaatgtga 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaaccataaatatgcaatctgtaaaacgagggagcagatgacgggtatgaatgtga 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 936
Length adjustment: 10
Effective length of query: 523
Effective length of database: 926
Effective search space:   484298
Effective search space used:   484298
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)