BAC Information

Click to search

BAC

Clone NameMSMg01-058C11
Chromosome6 (Build37)
Map Location 17,734,456 - 17,734,973
singlet/doubletsinglet
Overlap geneSt7
Upstream geneTcfec, EG435881, Tes, EG232599, Cav2, Cav1, Met, Capza2
Downstream geneWnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058C11.T7 (MSMg01no058_c11.b1)MSMg01-058C11.TJ (MSMg01no058_c11.g1)
ACCAG285136AG285137
length706718
length of high quality
(start - end)
423 (66 - 488)512 (77 - 588)
definitionCHROMAT_FILE: MSMg01no058_c11.b1 PHD_FILE: MSMg01no058_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:20 2005CHROMAT_FILE: MSMg01no058_c11.g1 PHD_FILE: MSMg01no058_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCGCTAAACGACTCCTATTTTCAGAAATGCGCGGAATTCTATTAT
ATACCCTCAAGAGAATACAAACTTTATACTTATACACTGGAGGAGATGGT
AGGCAAATATTAACTCATTCATCTGCAGAATTAAACTATTATGGTTCCAT
AAGATCAGAAAATTGTATGTGCAGCCAAAACACCAAAATGTCTATAATAA
TCTCAAGCCTAAACCACAGCCTGTAGGTAGCATTTGTTGGCTTCACTGAC
TGCGACAGTTCATGCAGACCAAAGTGCACATCCTGTGTTCAGAAGCAGGG
CTGCAGCACATGTCACGTGATACAACGGAGGCACAGCCAGAGACATCTCA
GATTCACTGCACATATGAGTTTGAATTCATTTCTCGCATTGTATTTTCAG
AAACATTTTATTACCGTCATTTTTTCCACAATCCCTCACATTCCATTGTA
AAGCCCCATATGGAGTTGGGACCCAATTTTAAAATTAGGGACTAGATTAT
AAAAATTTCTAGTTTTAAGTCATGAAGGTATAAAGACGAATGCCTGTGGT
ATTTTCTGTCTGTCTGTCTGTCTGTCTATCTATTTAATGTTAATTTTCCA
TCATTGTGACAAAAGAACTAGCTAATATAATTTGCAAATAAAATATCTTA
TTTTTAAGATTTTCGGCCATGATTCATTGTCCCCATTGTTCGTTGTTGTG
AGCTGT
NCCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTCCTTTTCTAGAACATTGAT
ATATTTAACATTGCAAACTTTCTATGATAGTGCATATTTGTATAGCCTCC
TCAAAAGATAAAATTGCAATGGTTTATCGTATCATATTAAACTTAGGAGG
AAGTCAAGGTTGGAATAGGGCTATGGTTGTATGATAAAGATTTGTTTCCT
TTGTGAGAGGCTCTTGATTTGATCTCTAGCAAACACCACAAAACAAAGAA
CAAACGAAACTCACGAAAGCAAACGCTTATGCTCTCAGATCAGATAGACA
CTGATTTGGGAATACCCGTGGGACGGCCGTGCTCTAGTGTCTTCTCTTCA
CCCAAGGGATACAATGTCACTGCGTGCTGTTTGTGCCAGGCCTCAGAAGG
GGTTTTACTTACATTAATGTATATCAGTATTGTTTTAAAATAGCTGATAT
AATAATTTTGAGAACATTAAATCCCTTTTTCAGTAAGTGCTTGGCTCCCT
TTTATTTCTTTACCAATAGCAGTATACCTATGACAACATCATATGAAATG
TACTTAAAGATGTTTTGGTTTGCCTAAAATTCTATCTAACTATCTTTGAT
AGTTTTGGTGGAATTTCACTTAATAGATGCTTCTATGTTGTATTGAATAT
GCCTGTGAAATGATGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_c11.g1 MSMg01no058_c11.g1 CHROMAT_FILE:
MSMg01no058_c11.g1 PHD_FILE: MSMg01no058_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:20 2005
         (512 letters)



>mm_chr6_17734256_17735173
          Length = 918

 Score =  886 bits (458), Expect = 0.0
 Identities = 501/518 (96%), Gaps = 6/518 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctccttttctagaacattgatatatttaacattgcaaactttctatgatagtgcata 60
           |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 tttctccttttctagaacatagatatatttaacattgcaaacattctatgatagtgcata 260

                                                                       
Query: 61  tttgtatagcctcctcaaaagataaaattgcaatggtttatcgtatcatattaaacttag 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 tttgtatagcctcctcaaaagataaaattgcaatggtttatcatatcatattaaacttag 320

                                                                       
Query: 121 gaggaagtcaaggttggaatagggctatggttgtatgataaagatttgtttcctttgtga 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct: 321 gaggaagtcaaggttggaatagggctatggttgtgtgataaagatttgtttcccttgtga 380

                                                                       
Query: 181 gaggctcttgatttgatctctagcaaacaccacaaaacaaagaacaaacgaaactcacga 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 381 gaggctcttgatttgatctctagcaaacaccacaaaacaaagaacaaacgaaacccagga 440

                                                                       
Query: 241 aagcaaacgcttatgctctcagatcagatagacactgatttgggaa-tacccgtgggacg 299
           |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 441 aagcaaacgcttatgctctcagatcagacagacactgatttgggaaatacccgtgggacg 500

                                                                       
Query: 300 gccgtgctctagtgtcttctcttcacccaagggatacaa-----tgtcactgcgtgctgt 354
           | | |||||||||||||||||||||||||||||||||||     ||||||||||||||||
Sbjct: 501 gtcatgctctagtgtcttctcttcacccaagggatacaacttaatgtcactgcgtgctgt 560

                                                                       
Query: 355 ttgtgccaggcctcagaaggggttttacttacattaatgtatatcagtattgttttaaaa 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgccaggcctcagaaggggttttacttacattaatgtatatcagtattgttttaaaa 620

                                                                       
Query: 415 tagctgatataataattttgagaacattaaatccctttttcagtaagtgcttggctccct 474
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tagttgatataataattttgagaacattaaatccctttttcagtaagtgcttggctccct 680

                                                 
Query: 475 tttatttctttaccaatagcagtatacctatgacaaca 512
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tttatttctttaccaatagcagtatacctatgacaaca 718


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 918
Length adjustment: 10
Effective length of query: 502
Effective length of database: 908
Effective search space:   455816
Effective search space used:   455816
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)