MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-058P05
Chromosome	6 (Build37)
Map Location	136,913,548 - 136,913,719
singlet/doublet	singlet
Overlap gene	none
Upstream gene	Grin2b, EG668137, LOC545887, E330021D16Rik, EG627022, LOC100043893, Atf7ip, 1100001H23Rik, LOC100043894, Gucy2c, Hist4h4, H2afj, Wbp11, BC049715, C030030A07Rik, Art4, Mgp, Erp27, Arhgdib, Pde6h
Downstream gene	Rerg, Ptpro, Eps8, Strap, Dera
Link	Open Mouse BAC browser

Click to get alignment info.

name	Grin2b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14812 MGI:95821
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG668137 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:668137 MGI:3644226
definition	note : predicted gene, EG668137 pseudo : _no_value

name	LOC545887 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545887
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 143 ESTs, 58 Proteins pseudo : _no_value

name	E330021D16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:243676 MGI:2141773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA pseudo : _no_value

name	EG627022 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:627022 MGI:3643418
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 27 ESTs, 10 Proteins

name	LOC100043893 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043893
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 279 ESTs, 6 Proteins

name	Atf7ip (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54343 MGI:1858965
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	1100001H23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66857 MGI:1914107
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043894 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043894
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Gucy2c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14917 MGI:106903
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Hist4h4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320332 MGI:2448443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	H2afj (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232440 MGI:3606192
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wbp11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:60321 MGI:1891823
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC049715 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320135 MGI:3605234
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C030030A07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:654818 MGI:2443451
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Art4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:109978 MGI:1202710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mgp (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17313 MGI:96976
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Erp27 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69187 MGI:1916437
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Arhgdib (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:11857 MGI:101940
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pde6h (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78600 MGI:1925850
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rerg (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232441 MGI:2665139
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ptpro (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19277 MGI:1097152
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eps8 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13860 MGI:104684
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Strap (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20901 MGI:1329037
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dera (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:232449 MGI:1913762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Grin2b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117168298 GeneID:14812 MGI:95821
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamate receptor, ionotropic, NMDA2B (epsilon 2) transcript_id : NM_008171.3

name	EG627022 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149255379 GeneID:627022 MGI:3643418
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 27 ESTs, 10 Proteins product : predicted gene, EG627022 transcript_id : XM_891654.3

name	LOC100043893 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149255458 GeneID:100043893
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 279 ESTs, 6 Proteins product : similar to ribosomal protein L36a transcript_id : XM_001481171.1

name	Atf7ip (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328231 GeneID:54343 MGI:1858965
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : activating transcription factor 7 interacting protein transcript_id : NM_019426.2

name	1100001H23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:13385273 GeneID:66857 MGI:1914107
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1100001H23 gene transcript_id : NM_025806.1

name	Gucy2c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801773 GeneID:14917 MGI:106903
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : guanylate cyclase 2c transcript_id : NM_145067.2

name	Hist4h4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:28316745 GeneID:320332 MGI:2448443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : histone cluster 4, H4 transcript_id : NM_175652.1

name	H2afj (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364094 GeneID:232440 MGI:3606192
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : H2A histone family, member J transcript_id : NM_177688.3

name	Wbp11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31982142 GeneID:60321 MGI:1891823
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WW domain binding protein 11 transcript_id : NM_021714.3

name	BC049715 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119392078 GeneID:320135 MGI:3605234
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC049715 transcript_id : NM_178776.3

name	C030030A07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:112363104 GeneID:654818 MGI:2443451
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030030A07 gene transcript_id : NM_001039558.2

name	Art4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142374158 GeneID:109978 MGI:1202710
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ADP-ribosyltransferase 4 transcript_id : NM_026639.2

name	Mgp (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:123701577 GeneID:17313 MGI:96976
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : matrix Gla protein transcript_id : NM_008597.3

name	Erp27 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142352104 GeneID:69187 MGI:1916437
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : endoplasmic reticulum protein 27 transcript_id : NM_026983.2

name	Arhgdib (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142350461 GeneID:11857 MGI:101940
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho, GDP dissociation inhibitor (GDI) beta transcript_id : NM_007486.2

name	Pde6h (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114158703 GeneID:78600 MGI:1925850
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : phosphodiesterase 6H, cGMP-specific, cone, gamma transcript_id : NM_023898.4

name	Rerg (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:32526868 GeneID:232441 MGI:2665139
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RAS-like, estrogen-regulated, growth-inhibitor transcript_id : NM_181988.1

name	Ptpro (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47059068 GeneID:19277 MGI:1097152
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein tyrosine phosphatase, receptor type, O transcript_id : NM_011216.2

name	Eps8 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:75677396 GeneID:13860 MGI:104684
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : epidermal growth factor receptor pathway substrate 8 transcript_id : NM_007945.2

name	Strap (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802079 GeneID:20901 MGI:1329037
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : serine/threonine kinase receptor associated protein transcript_id : NM_011499.2

name	Dera (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:27777676 GeneID:232449 MGI:1913762
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 2-deoxyribose-5-phosphate aldolase homolog (C. elegans) transcript_id : NM_172733.1

name	Grin2b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117168299 CCDS:CCDS20648.1 GeneID:14812 MGI:95821
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005624 - membrane fraction [Evidence IDA]; GO:0045211 - postsynaptic membrane [Evidence IDA]; GO:0042734 - presynaptic membrane [Evidence IEP]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005234 - glutamate-gated ion channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004970 - ionotropic glutamate receptor activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0007611 - learning and/or memory [Evidence TAS]; GO:0048168 - regulation of neuronal synaptic plasticity [Evidence TAS]; GO:0007268 - synaptic transmission [Evidence TAS]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : GluRepsilon2; N-methyl D-aspartate receptor 2B product : glutamate receptor, ionotropic, NMDA2B (epsilon 2) precursor protein_id : NP_032197.3

name	EG627022 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94378174 GeneID:627022 MGI:3643418
definition	codon_start : 1 product : similar to Coenzyme Q2 homolog, prenyltransferase (yeast) protein_id : XP_896747.2

name	LOC100043893 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149255459 GeneID:100043893
definition	codon_start : 1 product : similar to ribosomal protein L36a protein_id : XP_001481221.1

name	Atf7ip (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328232 CCDS:CCDS20651.1 GeneID:54343 MGI:1858965
definition	GO_component : GO:0005634 - nucleus [Evidence ISS]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0016887 - ATPase activity [Evidence IDA]; GO:0005515 - protein binding [Evidence ISS]; GO:0003714 - transcription corepressor activity [Evidence IDA] GO_process : GO:0006306 - DNA methylation [Evidence ISS]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0045893 - positive regulation of transcription, DNA-dependent [Evidence ISS]; GO:0045898 - regulation of transcriptional preinitiation complex formation [Evidence ISS] codon_start : 1 note : ATFa-associated Modulator product : activating transcription factor 7 interacting protein protein_id : NP_062299.2

name	1100001H23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385274 CCDS:CCDS20652.1 GeneID:66857 MGI:1914107
definition	codon_start : 1 product : hypothetical protein LOC66857 protein_id : NP_080082.1

name	Gucy2c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71894985 CCDS:CCDS20653.1 GeneID:14917 MGI:106903
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0004383 - guanylate cyclase activity [Evidence IMP]; GO:0016829 - lyase activity [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA] GO_process : GO:0006182 - cGMP biosynthesis [Evidence IMP] [Evidence IDA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA]; GO:0009636 - response to toxin [Evidence IMP] codon_start : 1 exception : mismatches in translation note : guanylyl cyclase C; heat stable enterotoxin receptor product : guanylate cyclase 2c protein_id : NP_659504.1

name	Hist4h4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28316746 GeneID:320332 MGI:2448443
definition	codon_start : 1 product : histone 4, H4 protein_id : NP_783583.1

name	H2afj (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244126 CCDS:CCDS20654.1 GeneID:232440 MGI:3606192
definition	GO_component : GO:0005694 - chromosome [Evidence IEA]; GO:0000786 - nucleosome [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0007001 - chromosome organization and biogenesis (sensu Eukaryota) [Evidence IEA]; GO:0006334 - nucleosome assembly [Evidence IEA] codon_start : 1 product : H2A histone family, member J protein_id : NP_808356.1

name	Wbp11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982143 CCDS:CCDS20655.1 GeneID:60321 MGI:1891823
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0016607 - nuclear speck [Evidence IDA]; GO:0005730 - nucleolus [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0008599 - protein phosphatase type 1 regulator activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0008380 - RNA splicing [Evidence IDA]; GO:0006364 - rRNA processing [Evidence IEA] codon_start : 1 exception : mismatches in translation note : Npw38-binding protein product : WW domain binding protein 11 protein_id : NP_068360.3

name	C030030A07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:112363105 CCDS:CCDS20656.1 GeneID:654818 MGI:2443451
definition	codon_start : 1 product : hypothetical protein LOC654818 protein_id : NP_001034647.2

name	BC049715 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119392079 GeneID:320135 MGI:3605234
definition	codon_start : 1 product : hypothetical protein LOC320135 protein_id : NP_848891.2

name	Art4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386130 CCDS:CCDS20658.1 GeneID:109978 MGI:1202710
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0003956 - NAD(P)+-protein-arginine ADP-ribosyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : mono(ADP-ribosyl)transferase product : ADP-ribosyltransferase 4 protein_id : NP_080915.1

name	Mgp (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678876 CCDS:CCDS20659.1 GeneID:17313 MGI:96976
definition	GO_component : GO:0005576 - extracellular region [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005125 - cytokine activity [Evidence IEA] GO_process : GO:0051216 - cartilage development [Evidence IEA]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0001503 - ossification [Evidence IEA]; GO:0030500 - regulation of bone mineralization [Evidence IEA] codon_start : 1 note : matrix gamma-carboxyglutamate (gla) protein product : matrix Gla protein protein_id : NP_032623.1

name	Erp27 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21746145 CCDS:CCDS20660.1 GeneID:69187 MGI:1916437
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA] codon_start : 1 product : endoplasmic reticulum protein 27 protein_id : NP_081259.1

name	Arhgdib (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33563236 CCDS:CCDS20661.1 GeneID:11857 MGI:101940
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005094 - Rho GDP-dissociation inhibitor activity [Evidence IEA] codon_start : 1 product : Rho, GDP dissociation inhibitor (GDI) beta protein_id : NP_031512.1

name	Pde6h (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981372 GeneID:78600 MGI:1925850
definition	GO_function : GO:0030553 - cGMP binding [Evidence IEA] GO_process : GO:0000187 - activation of MAPK activity [Evidence IDA]; GO:0045742 - positive regulation of epidermal growth factor receptor signaling pathway [Evidence IDA]; GO:0045745 - positive regulation of G-protein coupled receptor protein signaling pathway [Evidence IDA]; GO:0050896 - response to stimulus [Evidence IEA] codon_start : 1 note : cone-like cGMP-phosphodiesterase 6 gamma subunit type 2; cone phosphodiesterase 6 gamma product : phosphodiesterase 6H, cGMP-specific, cone, gamma protein_id : NP_076387.2

name	Rerg (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:32526869 CCDS:CCDS20663.1 GeneID:232441 MGI:2665139
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005525 - GTP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA] GO_process : GO:0007264 - small GTPase mediated signal transduction [Evidence IEA] codon_start : 1 product : RAS-like, estrogen-regulated, growth-inhibitor protein_id : NP_871788.1

name	Ptpro (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47059069 CCDS:CCDS20664.1 GeneID:19277 MGI:1097152
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0004725 - protein tyrosine phosphatase activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0007185 - transmembrane receptor protein tyrosine phosphatase signaling pathway [Evidence IEA] codon_start : 1 exception : mismatches in translation note : receptor protein tyrosine phosphatase RO product : protein tyrosine phosphatase, receptor type, O protein_id : NP_035346.2

name	Eps8 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:75677397 CCDS:CCDS20665.1 GeneID:13860 MGI:104684
definition	GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA] codon_start : 1 note : epidermal growth factor receptor kinase substrate 8 product : epidermal growth factor receptor pathway substrate 8 protein_id : NP_031971.2

name	Strap (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755682 GeneID:20901 MGI:1329037
definition	GO_function : GO:0016301 - kinase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0005102 - receptor binding [Evidence IDA] GO_process : GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0030512 - negative regulation of transforming growth factor beta receptor signaling pathway [Evidence IDA] codon_start : 1 product : serine/threonine kinase receptor associated protein protein_id : NP_035629.1

name	Dera (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27777677 CCDS:CCDS20666.1 GeneID:232449 MGI:1913762
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA] GO_function : GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]; GO:0016829 - lyase activity [Evidence IEA] GO_process : GO:0009264 - deoxyribonucleotide catabolism [Evidence IEA] codon_start : 1 product : deoxyribose-phosphate aldolase-like protein_id : NP_766321.1

name	LOC100043894 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043894
definition	number : 1 pseudo : _no_value

name	(CDS detail)
type	STS
link
xref	UniSTS:130852
definition	standard_name : D6Mit301

name	(CDS detail)
type	STS
link
xref	UniSTS:119997
definition	standard_name : RH94750

name	(CDS detail)
type	STS
link
xref	UniSTS:130807
definition	standard_name : D6Mit258

name	(CDS detail)
type	STS
link
xref	UniSTS:498328
definition	standard_name : Tubb3

name	(CDS detail)
type	STS
link
xref	UniSTS:208042
definition	standard_name : RH127208

name	(CDS detail)
type	STS
link
xref	UniSTS:130894
definition	standard_name : D6Mit339

name	(CDS detail)
type	STS
link
xref	UniSTS:130895
definition	standard_name : D6Mit339.2

name	(CDS detail)
type	STS
link
xref	UniSTS:208043
definition	standard_name : BB199614

name	(CDS detail)
type	STS
link
xref	UniSTS:211892
definition	standard_name : RH128584

name	(CDS detail)
type	STS
link
xref	UniSTS:179481
definition	standard_name : AI893437

name	(CDS detail)
type	STS
link
xref	UniSTS:489545
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:142645
definition	standard_name : RH125848

name	(CDS detail)
type	STS
link
xref	UniSTS:161685
definition	standard_name : RH124863

name	(CDS detail)
type	STS
link
xref	UniSTS:124320
definition	standard_name : 39.MMHAP34FRE12.seq

name	(CDS detail)
type	STS
link
xref	UniSTS:130839
definition	standard_name : D6Mit291

name	(CDS detail)
type	STS
link
xref	UniSTS:179482
definition	standard_name : AW261790

name	(CDS detail)
type	STS
link
xref	UniSTS:159581
definition	standard_name : L21671

name	(CDS detail)
type	STS
link
xref	UniSTS:235568
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:163013
definition	standard_name : RH126305

name	(CDS detail)
type	STS
link
xref	UniSTS:208044
definition	standard_name : RH126628

name	(CDS detail)
type	STS
link
xref	UniSTS:179483
definition	standard_name : AW557906

name	(CDS detail)
type	STS
link
xref	UniSTS:235567
definition

name	(CDS detail)
type	STS
link
xref	UniSTS:130853
definition	standard_name : D6Mit302

name	LOC545887 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149255457 GeneID:545887
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 143 ESTs, 58 Proteins product : similar to tubulin beta-3 pseudo : _no_value transcript_id : XR_035030.1

name	E330021D16Rik (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:149255123 GeneID:243676 MGI:2141773
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA E330021D16 gene pseudo : _no_value transcript_id : XR_035141.1

clone name	MSMg01-397F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-133M24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-207P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-397O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423E10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-501D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345O11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365A08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-078D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-217A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192N17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133O24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-130H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078D03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-472C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167D12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-167C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-147J05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-368E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-068H18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449B15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132E05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-299L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-169F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-102D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425I09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450K18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080L14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-150P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-131H04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-434E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-052O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387K08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266M04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371P07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422C13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432B01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-430E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-424I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459J11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-452E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137N08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141H11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521K01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-061N20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140I01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-328L23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-434N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-298K13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-180M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-149B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-523E10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-462F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242B05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059E05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-009N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337H09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-077P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220P14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-130H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337I06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023J02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-210J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320D04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-277B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-083E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-143H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058E04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-119A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136E24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-107H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-005F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-088K22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045D17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-062N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041P04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320C06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-320G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317B06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-042F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-261G11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338O18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-325J22
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-058P05.T7 (MSMg01no058_p05.b1)	MSMg01-058P05.TJ (MSMg01no058_p05.g1)
ACC	AG285744	AG285745
length	743	719
length of high quality (start - end)	---	172 (75 - 246)
definition	CHROMAT_FILE: MSMg01no058_p05.b1 PHD_FILE: MSMg01no058_p05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:20 2005	CHROMAT_FILE: MSMg01no058_p05.g1 PHD_FILE: MSMg01no058_p05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:20 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	TTCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAAAGGATGCGNG GAATTCTCATATCCCCCAAAAAGAATGGNTGAGAGGCACCTAATGAAATG TTCAACATCCTTAATCATCCCCCAAATGCAAATCAAAACAACCCTGATAT TCTACCTCATACCAGTTAGAATGGCTAAGATAAAAAATTCATGTGACAGC AGATGCTGGCAAGGATGCGGAGAAAGAGGAACACTCCTCCATTGCTGGTG GAATTGCAAGCTTTTACAACCACTCGGAAAATCAGGTTGGTGGTTCCTCA CAAAATTGTACATAGTACTATCTTATGATCCATCTATACCACTCCTGGGC ATATACTCATAATTTGCTCCACCATGCAATAAGGACACATGTTCCACTCT GTTTATAGCTTCCTTATTTATAATACACAGAAGCTGGTACAAATCCCAGA TGTCCTTCTATATAATAACGTATCCTGATAATGCGCTACATTTACACACT TGCATTACTACTCACCCTACCAACCAATGATGAATTCTCCGAATCCCTTA CCCAACCTGTATGTTACTCTAAATTTTTCCTTCTTGTTCGCACGTAAACC CATATCTCCTTTAGAACGATACATAGTAATGTTAACTCCCCGCATAAATT GGATCAATATCCATCCCAACCTTTTCCGTGATATCACCTTAACCATATTC AACATTTATAATAAACTTCCTTTTTATATATTCATATTGATAA	CGATGATAGTGGGAGGCCTGGAGGACGCCTGTCCAAAGAAGGGGGGGTGA ACTATAGATTTCCCGAGGAATCCATAATTTGAGGTTCACAGCGGCGGCAA AATAAATGGCTTTGTGGTCTTCAGTACTTAAGCATGAAAAGGGGAGACTC AGGAGAGGGACTCATTTCTCATGAGCCTGTCCCCTGCCACCAGTGCTATG ACAATTACTTTGTAATGGCTGAATAATCTTCTAGCCATAAAGCTAGAAAC AGACGAGAAAAAGCAAAATATGAACTTGAAAGTGTAAGTGCTTGATGAAT GAGACAGCCGGGGAATGTGATCTTGCACTGCACCACGAAACTCCCCGTGG CCTCCCTGTCTTCCCTCCAAACACCGTGAGTCAGTTGTGGCATCTGATAA CCATCACCCCTTATTCCTGCCTTGTGCTTGGTCTTTGGACTACGGAGGTC TAGTTCTTCACCTGCACAAGGTTATGGATCACATTCAGTTTACTTTATAG ATGCCATTCCCCCCCCCCTAAAGATTAATACTTGTCCACCCAACAGACTT GAGAACACCGCTGTGTGTCTTGCTACCTTCTCTAACATCTAGTGACAAAA TATCGGCGAAATACATCTTGACGGGTCCTTCACCTATCCTTGCTTCAACA CCCTTTTAGAGCTTTTCTCTCCTCTTTGCTGCGAATATAGATCTCTCTAT TTTTTGTGGCCTATTATTG
quality values	Open. Hide. 8 8 10 7 9 9 10 14 16 16 18 20 23 22 22 22 31 31 23 19 10 10 8 8 11 12 22 15 9 8 7 7 8 8 9 9 9 12 17 18 17 10 10 10 9 10 12 3 0 3 18 19 25 27 37 37 27 15 9 9 7 7 11 11 16 20 10 15 15 10 10 8 10 10 15 18 16 3 0 3 15 9 11 11 16 12 15 15 24 26 24 16 11 11 11 16 23 31 31 22 20 22 23 24 23 22 32 37 31 32 28 28 23 18 15 12 12 12 12 11 11 13 11 10 10 13 18 13 13 13 15 15 32 30 33 28 28 28 23 28 23 23 26 28 13 13 8 8 10 11 14 17 17 17 26 29 39 39 39 32 24 21 14 13 13 11 15 12 12 12 23 19 17 17 17 18 20 11 11 12 24 21 19 15 9 10 10 15 17 8 8 8 8 12 12 28 24 24 15 15 11 12 11 16 16 25 21 12 12 12 12 11 16 13 14 18 12 16 15 15 14 14 14 24 18 19 17 23 22 23 29 28 28 28 23 23 23 30 30 43 43 43 46 36 30 22 17 13 13 13 12 12 21 21 19 12 12 12 11 13 21 21 28 28 26 18 13 13 13 21 21 19 19 18 21 18 14 14 13 21 21 21 16 15 9 9 11 23 16 20 20 20 20 20 24 29 26 25 12 11 11 11 16 16 18 19 12 14 12 12 13 8 8 8 8 6 6 8 8 8 6 6 6 8 11 10 10 10 9 15 16 12 12 10 11 11 11 15 18 18 24 25 33 30 24 19 15 10 12 15 13 10 18 24 16 13 10 10 10 6 8 6 6 8 8 9 12 19 13 10 8 8 8 8 8 8 14 15 18 18 19 12 11 11 11 15 15 15 13 11 13 13 8 8 8 12 12 10 15 15 19 12 12 10 10 8 8 8 8 8 8 8 12 14 24 21 12 12 10 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 14 11 10 8 6 6 8 8 8 10 8 8 8 8 8 8 13 13 10 12 10 10 8 8 8 6 6 8 8 8 8 8 8 8 10 10 8 8 8 8 8 8 10 11 11 11 12 16 11 9 9 11 12 12 12 12 12 12 10 9 9 9 9 9 9 10 10 10 11 11 11 13 13 11 11 11 10 10 10 10 10 10 10 8 8 8 8 8 12 12 12 11 10 10 14 19 14 15 14 14 17 16 16 8 8 8 8 8 8 9 8 8 10 10 10 8 13 12 11 11 11 15 10 9 9 9 9 9 8 8 8 10 8 8 8 8 8 8 10 10 8 10 12 13 12 12 10 10 10 11 9 8 8 8 8 8 8 8 8 8 8 8 8 8 10 15 8 10 9 8 8 8 8 10 9 9 10 10 9 10 10 11 8 6 6 8 8 8 8 8 7 8 8 9 9 9 10 10 8 8 6 6 8 8 8 8 10 8 7 7 11 10 12 14 15 12 12 10 9 9 9 9 10 9 10 8 10 8 8 8 6 8 6 6 8 8 11 11 17 18 15 10 11 11 15 15 10 8 8 8 7 7 10 8 8 9 8 8 8 10 8 8 11 11 11 11 12 12 11 11 11 10 10 10 10 10 10 10 10 10 8 8 8 10 13 11 12 8 8 8 8 12 13 12 8 8 10 8 8 8 8 8 8 7 9 10 10 10 10	Open. Hide. 8 8 8 8 9 9 10 9 10 10 10 10 10 16 13 10 18 18 17 18 17 13 8 8 8 8 8 9 10 10 10 6 7 6 6 7 6 9 9 12 12 12 11 11 11 12 12 21 11 11 11 23 23 41 25 22 9 9 9 12 10 11 11 10 10 10 12 10 8 8 8 8 11 15 24 22 30 30 36 36 39 30 30 32 36 33 25 23 21 19 22 22 17 17 17 13 9 9 9 15 19 33 33 28 28 30 28 24 22 23 20 30 29 28 21 18 12 12 12 25 24 30 28 28 34 37 43 39 37 32 30 32 28 37 33 36 25 25 25 25 33 28 30 30 31 31 30 33 31 29 22 17 17 19 21 19 21 16 19 32 32 25 21 15 16 16 24 29 31 35 35 25 32 16 16 15 27 30 42 37 35 35 42 42 44 40 40 44 46 42 32 24 14 14 14 16 16 24 24 28 24 18 14 14 18 28 28 35 35 33 33 27 19 19 17 17 17 17 20 24 32 20 20 20 32 32 32 28 32 33 27 27 23 21 32 32 35 35 43 37 37 32 38 18 17 17 14 19 13 11 11 11 13 15 18 12 16 13 19 18 18 18 13 18 18 32 32 32 32 32 32 32 28 23 21 20 26 26 13 13 13 18 24 13 13 13 16 16 12 11 11 11 16 32 29 27 21 24 15 12 15 12 14 14 15 13 13 11 11 11 11 11 13 10 17 13 13 11 12 11 11 12 15 18 11 11 22 24 28 22 16 12 8 8 8 8 10 13 17 22 22 22 31 36 37 37 19 19 13 13 13 16 18 19 16 16 12 12 12 19 21 28 31 22 19 15 15 12 15 15 14 14 14 17 24 21 20 20 16 18 11 10 8 8 8 11 13 16 14 12 12 12 11 11 12 16 11 11 12 12 12 13 14 14 18 18 14 14 14 23 24 28 19 19 22 29 29 25 25 32 37 28 29 15 15 12 10 10 19 14 12 14 20 19 16 19 10 10 10 11 12 15 11 11 11 11 10 10 12 12 10 11 13 13 12 10 22 15 12 10 9 14 13 16 13 15 15 18 21 15 9 8 10 10 8 8 8 12 8 8 8 9 9 9 10 10 10 10 10 10 12 10 10 10 16 17 10 10 8 8 8 12 11 9 9 10 14 10 16 23 32 23 28 28 36 34 32 32 23 22 19 17 12 9 9 9 8 8 7 7 10 10 10 10 10 13 12 15 15 15 9 9 9 9 9 9 11 15 11 11 10 8 8 8 10 10 10 10 9 11 10 10 10 12 13 17 16 18 11 9 9 9 11 12 8 8 7 7 8 10 12 8 8 8 8 8 8 8 8 8 8 10 7 6 8 8 8 8 8 10 11 18 21 16 11 10 8 8 8 8 10 8 8 6 6 8 10 8 9 8 8 10 10 8 8 8 8 8 8 8 8 8 8 8 10 10 10 8 8 10 12 8 8 8 8 8 8 7 6 6 8 8 11 10 10 10 10 10 10 10 11 11 11 13 23 11 10 10 13 10 10 7 6 6 8 6 9 10 10 11 11 12 10 10 10 8 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 10 10 10 10 10 9 9 8 12 10 8 8 8 8 10 8

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no058_p05.g1 MSMg01no058_p05.g1 CHROMAT_FILE:
MSMg01no058_p05.g1 PHD_FILE: MSMg01no058_p05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:20 2005
         (172 letters)



>mm_chr6_136913348_136913919
          Length = 572

 Score =  310 bits (160), Expect = 4e-89
 Identities = 169/172 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taatttgaggttcacagcggcggcaaaataaatggctttgtggtcttcagtacttaagca 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 taatttgaggttcacagcggcggtaaaataaatggctttgtggtcttcagtacttaagca 260

                                                                       
Query: 61  tgaaaaggggagactcaggagagggactcatttctcatgagcctgtcccctgccaccagt 120
           ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||
Sbjct: 261 tgaaaaggggagactcaggagagggactcagctctcatgagcctgtcccctgccaccagt 320

                                                               
Query: 121 gctatgacaattactttgtaatggctgaataatcttctagccataaagctag 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctatgacaattactttgtaatggctgaataatcttctagccataaagctag 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information