BAC Information

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BAC

Clone NameMSMg01-058P13
Chromosome6 (Build37)
Map Location 47,925,058 - 48,082,604
singlet/doubletdoublet
Overlap geneLOC623601, Zfp777, Zfp746
Upstream geneCntnap2, LOC622745, LOC100041064, LOC100041078, A930035D04Rik, Cul1, Ezh2, Rn4.5s, EG384379, Pdia4, LOC100041154, Zfp786, Zfp398, Zfp282, Zfp212, A230106D06Rik, AI894139
Downstream geneLOC665990, Krba1, Zfp467, Sspo, EG666005, Atp6v0e2, Lrrc61, Rarres2, EG330305, Repin1, Zfp775, AI854703, Gimap8, LOC100040560, Gimap9, Gimap4, Gimap6, Gimap7, LOC100041450, Gimap1, Gimap5, Gimap3, Tmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058P13.T7 (MSMg01no058_p13.b1)MSMg01-058P13.TJ (MSMg01no058_p13.g1)
ACCAG285760AG285761
length711711
length of high quality
(start - end)
194 (122 - 315)487 (71 - 557)
definitionCHROMAT_FILE: MSMg01no058_p13.b1 PHD_FILE: MSMg01no058_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:21 2005CHROMAT_FILE: MSMg01no058_p13.g1 PHD_FILE: MSMg01no058_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,925,058 - 47,925,248)(48,082,218 - 48,082,604)
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGA
ATTCTGGTTTTCAAGAAACTACGCAGAGAAACCCTGTCTTGGGAAAAATC
TCCTGCTGGGGAGCTAGCGCCCGACTAAGACCACACTCCAGCTCACCACC
ACCTTCCACCACCAGCACAGAGTACTGTGGCTTCCTGCTCTCTTTCTGGG
GTAGGCTGGCTGGAAGAAAGCCTAAGGGCTCCTGGTTCACATTCCTGCCT
GCAGATGTGAGGATGGGTTTTGCACACGGTGTGAACACTCCAGCCTGCCA
AGGCTTTGCTTACCATCTTTTATTGTTGATGCTATTTGCTTTCCTCCAAT
CATATTGTTTTTTGCCCCCGCCCCCCACTTACTTATCCTTCTGCCTGTTT
TGAGAGTAAGGCTCCAGAAAAAAAAATATTCTGGCCAGATGGGGGGCCAC
CCCACAGACCCATACATCTGATTAGCTCACCGACGCTGATCAAACTCGAT
ACTTAGCATCCAGGATGCACTAGGCCCGTACCACTGTTCTCGTCACAAGT
CAAGCCTTTGGTCTAAGAACCCCTATCTGTGCCCAGTTTCCTAAGGTTGC
TTTATTAAAGTATCCCACATATTTCTGTCCTCAACCGAAACCGACCTAAT
CCCCCCCTGTCTCGAAAACCGAAGAGATTCCTCCAGTTCAACGTATAAGT
TAACTTTCCTN
CATTGCTGTGCGTAGGCCTGGAGGCCGCCTGTCCAAAAAAGGGAGGTGAC
ACTATAGATTTCCACGCGGAATTCTCTATCATAGTCCTTGCCTTTTCTTT
AAGACCCTAACAGAACCAGAGAAAACAGGAATATCCAGAAAGATGGAAGA
CAGATAAGAATGGGAGGAACATTGAGTGTATAAGAAAAGATGGGAGGCAG
CTATCCATCCACATGATGGGCAGGCCTGCAGAAGGTCTTAAATGTCTCAC
CTCTTAAGATCCATATTAAAAGTGGGTTTTCTCACCTCAAATGATTTATT
TAAGAAAAACTCTTGAGGCTATAGCAATGGCTCAGGGGTTAAGACCATTG
ACTGTTCTTCCAGAGGACCTGAGTTCAATTCCCAGTACCTACATGAAAGT
TTACTGCTGTCTATAACTCCAGTTTCAAGGAATCCAGCACCCTCACAGAC
AGACATGTATGCAAAGCATCAATCAATGTTCATAATATAAAAATAAAGAA
AAGGAAAAACCCTCACACATGTACCAAGCTGCTTAGTTTTTAGTTAATTC
CAGATGTAGTGAAGCTGACAGCCAAGAATAGTCAATACAGTGTCCCTGAC
CTGTCCTCCATGATCCTCCCCTCCACACCCCTCACCAAAACTCCAGGCTC
GAACCAGTACACACTTCTTATACAACAACCCCCTGGACTTCTCTCCATCT
AAGTCCACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_p13.b1 MSMg01no058_p13.b1 CHROMAT_FILE:
MSMg01no058_p13.b1 PHD_FILE: MSMg01no058_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:21 2005
         (194 letters)



>mm_chr6_47924858_47925451
          Length = 594

 Score =  346 bits (179), Expect = e-100
 Identities = 188/191 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgactaagaccacactccagctcaccaccaccttccaccaccagcacagagtactgtggc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgactaagaccacactccagctcaccaccaccttccaccaccagcacagagtactgtggc 260

                                                                       
Query: 61  ttcctgctctctttctggggtaggctggctggaagaaagcctaagggctcctggttcaca 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ttcctgctctctttctggggtaggctggctggaagaaagcctgagggctcctggttcaca 320

                                                                       
Query: 121 ttcctgcctgcagatgtgaggatgggttttgcacacggtgtgaacactccagcctgccaa 180
           |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 ttcctgcctgcagatgtgagaatgggttttgcacagggtgtgaacactccagcctgccaa 380

                      
Query: 181 ggctttgctta 191
           |||||||||||
Sbjct: 381 ggctttgctta 391


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no058_p13.g1 MSMg01no058_p13.g1 CHROMAT_FILE:
MSMg01no058_p13.g1 PHD_FILE: MSMg01no058_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:21 2005
         (487 letters)



>mm_chr6_48082218_48083104
          Length = 887

 Score =  702 bits (363), Expect = 0.0
 Identities = 381/387 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctctatcatagtccttgccttttctttaagaccctaacagaaccagagaaaacagga 60
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 387 attctctatcatagtccttgtcttttctttaagaccctaacagaaccagagaaaacagga 328

                                                                       
Query: 61  atatccagaaagatggaagacagataagaatgggaggaacattgagtgtataagaaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 atatccagaaagatggaagacagataagaatgggaggaacattgagtgtataagaaaaga 268

                                                                       
Query: 121 tgggaggcagctatccatccacatgatgggcaggcctgcagaaggtcttaaatgtctcac 180
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgggaggcagctatccatccgcatgatgggcaggcctgcagaaggtcttaaatgtctcac 208

                                                                       
Query: 181 ctcttaagatccatattaaaagtgggttttctcacctcaaatgatttatttaagaaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 207 ctcttaagatccatattaaaagtgggttttctcacctcaaatgatttatttcagaaaaac 148

                                                                       
Query: 241 tcttgaggctatagcaatggctcaggggttaagaccattgactgttcttccagaggacct 300
           ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 147 tcttgaggctagagcaatggctcaggggttaagagcattgactgttcttccagaggacct 88

                                                                       
Query: 301 gagttcaattcccagtacctacatgaaagtttactgctgtctataactccagtttcaagg 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 87  gagttcaattcccagtacctacatgaaaatttactgctgtctataactccagtttcaagg 28

                                      
Query: 361 aatccagcaccctcacagacagacatg 387
           |||||||||||||||||||||||||||
Sbjct: 27  aatccagcaccctcacagacagacatg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space:   418329
Effective search space used:   418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)