BAC Information

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BAC

Clone NameMSMg01-058P16
Chromosome6 (Build37)
Map Location 108,679,332 - 108,679,558
singlet/doubletsinglet
Overlap genenone
Upstream geneSetmar, Sumf1, LOC100043718, Itpr1, LOC677205, Bhlhb2
Downstream geneArl8b, Edem1, EG627371, LOC639110, LOC100043720
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058P16.T7 (MSMg01no058_p16.b1)MSMg01-058P16.TJ (MSMg01no058_p16.g1)
ACCAG285766AG285767
length715744
length of high quality
(start - end)
227 (120 - 346)43 (126 - 168)
definitionCHROMAT_FILE: MSMg01no058_p16.b1 PHD_FILE: MSMg01no058_p16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:22 2005CHROMAT_FILE: MSMg01no058_p16.g1 PHD_FILE: MSMg01no058_p16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATATGACTCACTATTTCCAAAGAAGCCGCGGAATTCANGCA
CTTTTCCGAGAAGGCGGGAAGATCAGAAACGAGTTCAAAGCCAGTCGAGA
CTACCAGAAACACTGCCCGGAAATTCTTATAACCAGTATGTAGACATTAT
TCTATTTAATCATCAAAACAGGCAACAAATCCAAACTGCAGATTATGGGG
CAAAGAGGTATGGTTGAAACTGTGACTACTATCTCTATCTGGTCACCTGA
GTTACTTAGACTTCTTGGGCCACTTTATCTGTAAAGCGGAGACTTCGATG
TTATCCGTTCCATATTATCACATCTGATAAACCGAATAGCTGTGAAGTAT
GTAATAGCTTTGCCCTTGCCCCAGTGGGAGGGATTGGCCCTTGCTGGCAA
TTGGCACCGATTGGAGGAAAAGTGCTAGGGTTCCATGTTAGCACCATTAC
CACTCCCAAGCTTTGAAGAATAGCTGGTCTTCCGGTCTTCCCTGCCTGTT
GATTGCCCGAATCTCCTCCGGCCATGCAGACGACGCCCGGCCATAAGGTT
CTTTTTGTCTAGTCTGAAACCCCGATGTGACTCCTTCGATCCAACCCCTC
GTCACAATACCGTCTGCCCTTGTTAATCGCCCTCGGACTTCCCCTTTGAT
CAATTAACCCACTTTAACTTTGACTTCACGGCCCATGGCATCCCTGTATC
CGCATCCCCTGTATT
TGGGAGGTTTGGCGGACGCCTGGCTCCAAAGAGGGGGGGAANTATAGAAG
GATTCCTGAAATTGCTTCCAAGGAAATTCCCGAAGATGTTTGTCCACAGA
TATGATATGGCCCTCAGTTGTACACATGTATCTGGTTTCTGATTTGTGTA
CTGGATTCTCTTCATCAAATAGCTCAAGATAGAAAAAAACAAGCAACAAG
AAAACATGTTCGGCTGGGCATACAGGCCCATAAATTTAATCCCAGCACTA
GGGAGGCCAAGGCACGCGCCACCTTTATGAGTCCGAGTCTAGCCCGGTCT
ACATAATGCGTTCTATGTTTTTCATTGCATGAACAAAGAGAGTACAGACG
CATATATGGAGTCATCGCGGCACGTAATGAGGACCATATATTCATTTATT
TCCTCGGTCAATCTACAAATAAAAAATTATATTGCCTCACCGCAAATAAC
AAAACCTGTTGTTCCTAATCAACACCAACCCCCATATCCAACACACCCGC
AAATATCCTCGTCCTCTTACTACTTAATTATATCTCTTTTTGTACACCCC
CCCCACTACACCCAATTTATCCCCTTCCACATCTCCCCCACAGTGTTTCC
CTCCCGCCCTTACTCAATAATTAATACTCTTTCCTCCCCCAGCCCGAAAA
TCCGACCCATTTCCCACCGCGACCCCAAAACCCCTCTCATTTAAACTCCT
CATCCCTTTAACCCCTCAACGCACATTCTTCCTCCTATCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_p16.b1 MSMg01no058_p16.b1 CHROMAT_FILE:
MSMg01no058_p16.b1 PHD_FILE: MSMg01no058_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:22 2005
         (227 letters)



>mm_chr6_108679132_108679758
          Length = 627

 Score =  369 bits (191), Expect = e-107
 Identities = 218/227 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaaattcttataaccagtatgtagacattattctatttaatcatcaaaacaggcaacaaa 60
           |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaaattcttataaccagtaaatagacattattctatttaatcatcaaaacaggcaacaaa 260

                                                                       
Query: 61  tccaaactgcagattatggggcaaagaggtatggttgaaactgtgactactatctctatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccaaactgcagattatggggcaaagaggtatggttgaaactgtgactactatctctatc 320

                                                                       
Query: 121 tggtcacctgagttacttagacttcttgggccactttatctgtaaagcggagacttcgat 180
           |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct: 321 tggtcacccgagttacttagacttcttgggtcactttatctgtaaagtggagacttcgat 380

                                                          
Query: 181 gttatccgttccatattatcacatctgataaaccgaatagctgtgaa 227
           ||||||||||||| |  ||||||||||||||||| ||||||||||||
Sbjct: 381 gttatccgttccacagcatcacatctgataaaccaaatagctgtgaa 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)