BAC Information

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BAC

Clone NameMSMg01-059B04
Chromosome6 (Build37)
Map Location 142,316,560 - 142,415,244
singlet/doubletdoublet
Overlap geneRecql, Golt1b, B230216G23Rik, Gys2
Upstream genePde3a, Slco1c1, Slco1b2, EG435927, Slco1a4, LOC100042750, EG664913, Slco1a1, EG625716, Slco1a6, Slco1a5, Iapp, BC027061
Downstream geneLdhb, Kcnj8, Abcc9, 5330439B14Rik, Cmas, Gm766, EG665037, St8sia1, LOC665056, 5730419I09Rik, Etnk1, D6Ertd474e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059B04.T7 (MSMg01no059_b04.b1)MSMg01-059B04.TJ (MSMg01no059_b04.g1)
ACCAG285837AG285838
length690695
length of high quality
(start - end)		479 (75 - 553)479 (74 - 552)
definitionCHROMAT_FILE: MSMg01no059_b04.b1 PHD_FILE: MSMg01no059_b04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:29 2005CHROMAT_FILE: MSMg01no059_b04.g1 PHD_FILE: MSMg01no059_b04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,316,560 - 142,317,038)(142,414,828 - 142,415,244)
sequence
ATTTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCCTTTCACCGGCCACCATTACTCTCTGCTAACAACCTAGAG
GACAGTGATGAAGGGATGGTAGGCTTCAGTCTCACTGGTGTAATCCTTAG
TCCTGGAACTCAGAAGCAGATGCTCCCAACTTTACCCTCCTTCTCCTGGT
AAATATGTGCAGTGCCCTTCCTGTAAGACACTGTGTCTCGTATCTCTTCA
GAATATTGAGACTCACTCAGTGATACTAAAGATACTAACAAACTTGTCAA
CAATACTTAGCACTGTCATCTACTCCACAGGAGGCAAAGCAGGCAACTTT
CACTCCAACTGTGACAGGGATGTCACACAGAGTCTCCTAAACCAAGTAAA
TGGATTTGACCTCATTTTCTGGTGTCAGTCATGTATCACTGGAGGAATCA
TGTGATTTCATAAAGTCTATGAAAGTCTTCCCCAAGCTGATTTGCTTTTA
GCATTACCTGATTGTCCTTTGTACCGTCCATTAATTAGCTTGACAATGTC
CTCAGTAAAGTCTTCAGCACTTGAGGGCTTTTGCCGAAACTACAAAAAAC
TGTCTCATTAAACAGTAGGCTCACCAGGGCCATCCAAGTTGTACCTGCTA
ACAATCTCTGCGGGATGCTTCCCTCTTTGGTAGCGCCCCT

NCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGCCCATGGTCAGCTCAAGGACTTT
CTAGGACGTTCGAACACTGGTGAAGGCTTAGCTATGTCAGAATTCAATCT
TAAAAGGCACTTATAATAAGAGAGCACATGGATCCATACACCAGACTAAT
GTGGGAATAGAATATGAGTATATGGGTTAAAGAGAACACCAGACTCCAGG
AGTGAGTTTCCGTGAAACTCTCTGTCTCGTGAGTGGCTTTTAGGCCTCTC
GGCCTGTCAAGCTGACTCAACCGGAGTGCGTAGCATATATCCTTGTCAGA
AGTCAGCTGGCTGCACACAGGTGGCCGCATTTCTAGGTTTGCTATTCTAT
TCCATTCACATCCCTGTTTTTATATATACATCATGATGGTTTGACTACTA
CAGTTTTTGCCATATGTTTTAGTGTGGTGTAATGTGGACAGGAGACAGAG
CAGATGAACTATAGCTAGCTGTAGGAAGTAGCGAGAGGGCATACTACAGG
AAGCCACCCTGAAGACAGCCAAAATGAGTGTTAATTTGAGACCTATAGTT
TAATACATATGGATATTCTAATGCCTATGGGCAGGATATGGCTGCAGGCG
ATGGAAAAATGGCCAGAGTTTAACCATCTATTGTTCTTGCATAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_b04.b1 MSMg01no059_b04.b1 CHROMAT_FILE:
MSMg01no059_b04.b1 PHD_FILE: MSMg01no059_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:29 2005
         (479 letters)



>mm_chr6_142316360_142317238
          Length = 879

 Score =  919 bits (475), Expect = 0.0
 Identities = 478/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattactctctgctaacaacctagaggacagtgatgaagggatggtaggcttcagtctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cattactctctgctaacaacctagaggacagtgatgaagggatggtaggcttcagtctca 260

                                                                       
Query: 61  ctggtgtaatccttagtcctggaactcagaagcagatgctcccaactttaccctccttct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggtgtaatccttagtcctggaactcagaagcagatgctcccaactttaccctccttct 320

                                                                       
Query: 121 cctggtaaatatgtgcagtgcccttcctgtaagacactgtgtctcgtatctcttcagaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctggtaaatatgtgcagtgcccttcctgtaagacactgtgtctcgtatctcttcagaat 380

                                                                       
Query: 181 attgagactcactcagtgatactaaagatactaacaaacttgtcaacaatacttagcact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attgagactcactcagtgatactaaagatactaacaaacttgtcaacaatacttagcact 440

                                                                       
Query: 241 gtcatctactccacaggaggcaaagcaggcaactttcactccaactgtgacagggatgtc 300
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcatctactccacagaaggcaaagcaggcaactttcactccaactgtgacagggatgtc 500

                                                                       
Query: 301 acacagagtctcctaaaccaagtaaatggatttgacctcattttctggtgtcagtcatgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acacagagtctcctaaaccaagtaaatggatttgacctcattttctggtgtcagtcatgt 560

                                                                       
Query: 361 atcactggaggaatcatgtgatttcataaagtctatgaaagtcttccccaagctgatttg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atcactggaggaatcatgtgatttcataaagtctatgaaagtcttccccaagctgatttg 620

                                                                      
Query: 421 cttttagcattacctgattgtcctttgtaccgtccattaattagcttgacaatgtcctc 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttttagcattacctgattgtcctttgtaccgtccattaattagcttgacaatgtcctc 679


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_b04.g1 MSMg01no059_b04.g1 CHROMAT_FILE:
MSMg01no059_b04.g1 PHD_FILE: MSMg01no059_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:29 2005
         (479 letters)



>mm_chr6_142414366_142415244
          Length = 879

 Score =  806 bits (417), Expect = 0.0
 Identities = 417/417 (100%)
 Strand = Plus / Minus

                                                                       
Query: 63  gtcagaattcaatcttaaaaggcacttataataagagagcacatggatccatacaccaga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 879 gtcagaattcaatcttaaaaggcacttataataagagagcacatggatccatacaccaga 820

                                                                       
Query: 123 ctaatgtgggaatagaatatgagtatatgggttaaagagaacaccagactccaggagtga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ctaatgtgggaatagaatatgagtatatgggttaaagagaacaccagactccaggagtga 760

                                                                       
Query: 183 gtttccgtgaaactctctgtctcgtgagtggcttttaggcctctcggcctgtcaagctga 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 gtttccgtgaaactctctgtctcgtgagtggcttttaggcctctcggcctgtcaagctga 700

                                                                       
Query: 243 ctcaaccggagtgcgtagcatatatccttgtcagaagtcagctggctgcacacaggtggc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ctcaaccggagtgcgtagcatatatccttgtcagaagtcagctggctgcacacaggtggc 640

                                                                       
Query: 303 cgcatttctaggtttgctattctattccattcacatccctgtttttatatatacatcatg 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 cgcatttctaggtttgctattctattccattcacatccctgtttttatatatacatcatg 580

                                                                       
Query: 363 atggtttgactactacagtttttgccatatgttttagtgtggtgtaatgtggacaggaga 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atggtttgactactacagtttttgccatatgttttagtgtggtgtaatgtggacaggaga 520

                                                                    
Query: 423 cagagcagatgaactatagctagctgtaggaagtagcgagagggcatactacaggaa 479
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cagagcagatgaactatagctagctgtaggaagtagcgagagggcatactacaggaa 463


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space:   407561
Effective search space used:   407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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