BAC Information

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BAC

Clone NameMSMg01-059D21
Chromosome6 (Build37)
Map Location 130,455,412 - 130,455,881
singlet/doubletsinglet
Overlap genenone
Upstream geneOlr1, D630042F21Rik, Gabarapl1, Klre1, Klrd1, Klrk1, Klrc3, Klrc2, Klrc1, LOC640755, Klri1, Klri2, Gm156, Klra17, Klra5, LOC667764, Klra6, LOC100038893, LOC100038894, LOC100038895, Klra4, LOC667769, LOC100038897, Klra8, EG654449, Klra9, Klra7, LOC100038898, Klra12, Klra10, Klra13, Klra3, Klra1, LOC100038902, LOC100038903, LOC625436, EG625473
Downstream geneLOC640779, LOC667793, EG667798, EG625558, LOC625566, EG636947, LOC625628, EG625648, LOC667830, EG434094, Klra2, LOC434095, 2010012C16Rik, Styk1, Csda, LOC625758
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059D21.T7 (MSMg01no059_d21.b1)MSMg01-059D21.TJ (MSMg01no059_d21.g1)
ACCAG285967AG285968
length704703
length of high quality
(start - end)
574 (45 - 618)469 (73 - 541)
definitionCHROMAT_FILE: MSMg01no059_d21.b1 PHD_FILE: MSMg01no059_d21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:42 2005CHROMAT_FILE: MSMg01no059_d21.g1 PHD_FILE: MSMg01no059_d21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:42 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTAAATTTGCGGCGCTAAACGACTCCTATATTCCGAAGATGCGCGGAAT
TCTCACCTGATGACACCGAATGGCTGAGAAACACCTGAAAAAATGTTCAG
CATCCTCAATCATCAGGGAAATACAAGTCAAAACATCCCTGAGACTCCAT
CTCACACCAGTCAGAATGGATGGCAATCTTCTGTCTGCCTGGGAATCAAC
ATGTCGAACTTTTGGCTCCTCCTCTAGCTCCACAGGTTTCTGTATGCTGC
CATGCTCCTATGTTAGCAATAGACTGAATCTCTGAACCTATAAACCATTG
CCCAATAAATGTCCTTTATAATAGTTGGATTGGTCATGGTGTTTCTTTCC
AGCAATAAAACACTAAGACAGAAGTTGTGTCAGGAGAAGGGTATTCTTGT
AAAAGGCCTAAATATGTGTTTTATTGGAAGAATGAGAATTTGGGGGCTGT
GAGTTTGGGAAGTAGTAGAAAGCTTTAAGTGGGACTTAATGTGCTATCCT
AGTAGGAATGTAGAGGATTTTCATGCTGAGTATGATTGGAACTGTGGAGA
CTTTTCCCAAGAGGTTTCAGTGTAGAAGAATTTTAGTATGTGGCCTAGAG
ACTGTTTTTTGACACTTTTCCATAGAGTCTGCCTGAGGTTACATTAAAGA
GATTTATGTTAATTGCTTTGATGAAGGAAGTCTTCAAAATTCCAGCAAAG
ACTT
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAAACTGTGCTTCAAGGTTTTGTTGGACA
TTTTCATTCATTTCTTCTTTTCATATTTTTGCTTTACATGGTATGATTTT
CACACTTTATGCCTATATGACCTGGATGGCAGAATTTTCAGAAATGCAAG
ATGTAGGTTTAGTCTACAAATAAATTTTCAAATTTTGTGATGTACATTTA
ATTAATAAAATTTATATTGCAATTATCTTTTTTTCTTTTCTTTTTCTTCT
TTCTTTTTTTAAATACATTTTAATTAGGTATTTTCCTCATTTACATTTCC
AATGCTATCCCAAAAGTCCTCCATACCCTTCCCCCCACTCCCCTAAAAAC
TCACTCGCACTTTTTGGCCCTGGCATTCCCCTGTACAGGGGCATATAAAG
TTTGTAAGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATC
TTTTGATACATATGGATCTATAATCAAGAGCTCCGGGGTACAGGTTAGTT
CATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGT
ATTTTCTGTAGCTCCTCTATTGGGGTCCCTGTGATCCATCCCATAGCTGG
TTGCGAGCATCCACTTTCTGTGCTTGCTAGGCCCCGGCAAAGTCTCACCA
GAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_d21.g1 MSMg01no059_d21.g1 CHROMAT_FILE:
MSMg01no059_d21.g1 PHD_FILE: MSMg01no059_d21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:42 2005
         (469 letters)



>mm_chr6_130455212_130456081
          Length = 870

 Score =  878 bits (454), Expect = 0.0
 Identities = 466/470 (99%), Gaps = 1/470 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactgtgcttcaaggttttgttggacattttcattcatttcttcttttca-tatttttg 59
           ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct: 201 aaactgtgcttcaaggttttgttggacattttcattcatttcttcttctcaatatttttg 260

                                                                       
Query: 60  ctttacatggtatgattttcacactttatgcctatatgacctggatggcagaattttcag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttacatggtatgattttcacactttatgcctatatgacctggatggcagaattttcag 320

                                                                       
Query: 120 aaatgcaagatgtaggtttagtctacaaataaattttcaaattttgtgatgtacatttaa 179
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 aaatgcaagatgtaggtttagtctacaaagaaattttcaaattttgtgatgtacatttaa 380

                                                                       
Query: 180 ttaataaaatttatattgcaattatctttttttcttttctttttcttctttcttttttta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaataaaatttatattgcaattatctttttttcttttctttttcttctttcttttttta 440

                                                                       
Query: 240 aatacattttaattaggtattttcctcatttacatttccaatgctatcccaaaagtcctc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatacattttaattaggtattttcctcatttacatttccaatgctatcccaaaagtcctc 500

                                                                       
Query: 300 catacccttccccccactcccctaaaaactcactcgcactttttggccctggcattcccc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 catacccttccccccactcccctaaaaactcactcgcactttttggccctggcattcccc 560

                                                                       
Query: 360 tgtacaggggcatataaagtttgtaagtccaatgggcctctctttccagtgatggccgac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtacaggggcatataaagtttgtaagtccaatgggcctctctttccagtgatggccgac 620

                                                             
Query: 420 taggccatcttttgatacatatggatctataatcaagagctccggggtac 469
           ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 621 taggccatcttttgatacatatgcatctataatcaagagctccggggtac 670


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space:   394740
Effective search space used:   394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)