BAC Information

Click to search

BAC

Clone NameMSMg01-059E22
Chromosome6 (Build37)
Map Location 29,011,927 - 29,012,445
singlet/doubletsinglet
Overlap geneLep
Upstream geneGrm8, 6530409C15Rik, AA407452, LOC100041304, LOC384360, Gcc1, Arf5, Fscn3, Pax4, LOC100041350, Snd1, Lrrc4, LOC100041367
Downstream geneRbm28, D330027H18Rik, Impdh1, 2310016C08Rik, AI507611, BC048651, Calu, Opn1sw, 4921511K06Rik, Flnc, Atp6v1f, EG668210, Crim2, Irf5, Tnpo3, Tspan33, Smo, 4631427C17Rik, D330017J20Rik, 1700023L04Rik, 1700080G18Rik, Nrf1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059E22.T7 (MSMg01no059_e22.b1)MSMg01-059E22.TJ (MSMg01no059_e22.g1)
ACCAG286017AG286018
length733732
length of high quality
(start - end)
502 (45 - 546)511 (68 - 578)
definitionCHROMAT_FILE: MSMg01no059_e22.b1 PHD_FILE: MSMg01no059_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:47 2005CHROMAT_FILE: MSMg01no059_e22.g1 PHD_FILE: MSMg01no059_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAATACGCGGAATTC
TTTGTTCAGTTCTCAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGG
AGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCT
GATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGT
CTTATTGACGGTGTCTTTTGCCAAGGCAACATTTAATTGAGTCTAGCTTA
CAGATTCGGAGGTTCAATTCACTATCATCCAGGCAGGAGGATGGCAGCAT
CCAGGCAGATGTGGGACTGGAGGATTTAAAATTTCTATACCTTGATCCAA
AGACGGACAGGAGAAGACTGGCTCTCATGTGGCTAGGAGGAGGGTCTCAA
AGCCCACTTCTTCAGTGACACACTTCTGCCGACAAGGCCACACCTACTCC
AATAAAGCTATACCTCCTAATAGTGCCACTCCCTGGGTCAAGCATATGCA
AACCACCACAATTGCTGTGTTCCTATTACCTCAACCTCTGAGGTAGCTGA
GATTACTTACAGTCCTGCACCACCTAGTGTGGCCTAATTCTGCTTGCTTT
TCTTTCTTTCTTTCTTTCTTTCATTCTTTCCTTCTTTCTTTCTTTCCTTC
TTTCTTTCTTTCTTTCTATTTTTCTTTCCTTCTTTCTTTCTTACTTTTCT
ATTTCCCTTTTTCTTTCCTCCCTCCTTCCTTTC
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCCCAATTCTCTCTCCATACATTTGCCTTCCAGAAATGCA
GAGGTTAGACTATAAGGAAAGACAGGGCACTCAGATACACCAGGCAGCTC
AGCGCTTGCTTCCCATGCCCTGCTCTACAGAATACTGCATGATCCCATCT
CTCCTGCTGTCTGTGAGCTCTCTAGATCTACAATCATGTCTGTGCTGACA
TTTCACCTAAACCAAAGACTAAGACTCCATCTGTGTGCGCATTGTCTTTG
CCCTCAGGAGTACCACAGAGTTCTGTTTGGAAGCCACACAATAGGCATAG
GAAGCTCAGTATTGGGTTCCTTGGCAAAGACAGGGCACCTAGAGTGCTGG
AAATGGACAGACACATACACGGGTTGGTGGTGGGGAGTCACTGGGAATAA
CAGTGCACACAGCGTAGGTAAGACTGAAAGGAATCAGAACTAGGTAGGCA
GGGGATACAGAAGAGATGTGGAGGCTTTGGAGGGAGAGAAAGACAGGCAC
TGGAGCACTTTAAGACAGCTTCTTAGGTATTTCTGTGGCGCAAAAGTAAA
TTCTAAAATGGCAGGCCATGCCTGCAATCTCATCACAAGAAAGACAGAGG
CAGGAGAATAAAGAGTTCACGGCCAGTCCGGCCCATGCGAGGTCATCTCT
AAATAAAGAATGATGATTTTTCATAGGTAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_e22.g1 MSMg01no059_e22.g1 CHROMAT_FILE:
MSMg01no059_e22.g1 PHD_FILE: MSMg01no059_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:47 2005
         (511 letters)



>mm_chr6_29011736_29012645
          Length = 910

 Score =  884 bits (457), Expect = 0.0
 Identities = 501/521 (96%), Gaps = 12/521 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctctctccatacatttgccttccagaaatgcagaggttagactataaggaaagacaggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 tctctctccatacatttgccttccagaaatgcagaggttagactataaggaaagacaggg 251

                                                                       
Query: 61  cactcagatacaccaggcagctcagcgcttgcttcccatgccctgctctacagaatactg 120
           |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct: 252 cactcagatacaccaggcagatcagcgcttgcttcccatgccctgctctacaaaatactg 311

                                                                       
Query: 121 catgatcccatctctcctgctgtctgtgagctctctagatctacaatcatgtctgtgctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 catgatcccatctctcctgctgtctgtgagctctctagatctacaatcatgtctgtgctg 371

                                                                       
Query: 181 acatttcacctaaaccaaagactaagactccatctgtgtgcgcattgtctttgccctcag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 acatttcacctaaaccaaagactaagactccatctgtgtgcgcattgtctttgccctcag 431

                                                                       
Query: 241 gagtaccacagagttctgtttggaagccacacaataggcataggaagctcagtattgggt 300
           ||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 432 gagtaccacagagttctgcagggaagccacacaataggcataggaagctcagtattgggt 491

                                                                       
Query: 301 tccttggcaaagacagggcacctagagtgctggaaatggacagacaca---------tac 351
           |||||||||||||||||||||||||||||||||||||||||||||| |         || 
Sbjct: 492 tccttggcaaagacagggcacctagagtgctggaaatggacagacatagaatggaaatag 551

                                                                       
Query: 352 acgggttggtggtggggagtcactgggaataacagtgcacacagc-gtaggtaagactga 410
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 552 acgggttggtggtggggagtcactgggaataacagtgcacacagcag-aggtaagactga 610

                                                                       
Query: 411 aaggaatcagaactaggtaggcaggggatacagaagagatgtggaggctttggagggaga 470
           |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct: 611 aaggaatcagaactaggtaggcaggg-atacaggagagatgtggaggctttggagggaga 669

                                                    
Query: 471 gaaagacaggcactggagcactttaagacagcttcttaggt 511
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaaagacaggcactggagcactttaagacagcttcttaggt 710


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 910
Length adjustment: 10
Effective length of query: 501
Effective length of database: 900
Effective search space:   450900
Effective search space used:   450900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)