BAC Information

Click to search

BAC

Clone NameMSMg01-059E24
Chromosome6 (Build37)
Map Location 42,575,684 - 42,709,968
singlet/doubletdoublet
Overlap geneBC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453
Upstream geneTrpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2
Downstream geneOlfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483, Olfr444, EG622841, Igk-V, Olfr443-ps1, GA_x5J8B7W6337-1183223-1183810, Olfr441, Olfr440-ps1, GA_x5J8B7W6337-1221999-1222591, Olfr438, Olfr437, Olfr13, GA_x5J8B7W6337-1270568-1271367, Olfr435, Olfr434, LOC665745, Olfr47, Arhgef5, Nobox, Tpk1, LOC665747
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-059E24.T7 (MSMg01no059_e24.b1)MSMg01-059E24.TJ (MSMg01no059_e24.g1)
ACCAG286021AG286022
length737735
length of high quality
(start - end)		556 (72 - 627)591 (71 - 661)
definitionCHROMAT_FILE: MSMg01no059_e24.b1 PHD_FILE: MSMg01no059_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:47 2005CHROMAT_FILE: MSMg01no059_e24.g1 PHD_FILE: MSMg01no059_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:01:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,709,425 - 42,709,968)(42,575,684 - 42,576,275)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAAATACGCGGAATTCT
TGTTTTTTTTGTCTTTTTTTGTTTTTTTGTTTTTTTGTTTTTTTGTTTTC
TTGTAAACAGTGGTGAAACTGAGCAGTATTCACCGAGCCTTAATAAGTAA
AATACAGTATTTTGGAAAGTGCAGTTGAACTACACCTTAGAAATTCACAA
AGCTGCTCTAATGGCTAAAGTGTATGCTTGTATGGAACATTTTTTTTTCT
TTGCTGAGCATTTAAAAATTAAACAATGTTAAATGGGAGGTTTGAACTTT
GTGAGATGAAGGTTCAGAAGAATCCACTGTGCTCAGTCATCAGTTTCTGC
TGATGCTCCATAATTCATCAAGGTCCAGAAAAAAAGCTGCAGCTTTACAT
GACAATGAACTAAGAATACAGAGAGAGTAGGAGAGATGTTACCAGAAAAG
AACAATTTTCTCAGTTAAGTTGTTATCATTGTTTCACACTAGAGGAAATT
ATGTCCCTGTGATTCTCGCTTTATTCAGTAATTATCGGTTAGAGCAAACA
TCAAGACGCAAACGTTCTGTCAATGACACACACGCAAAAGGTGTTCAGAT
TCCTCGAACAGTTTTGCATGACTTAGTACCTAATTTTTAAAATTAATTTA
AAACCGTCAACTTCTTCAATAAATTAAATCTATTTCTTTCTCCCATGGAT
AACATTTGAAATTTACCATAGAATTTTGTCTAAATGA

TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTTCCATTTTCATGTATATTCAAAAAAATC
ATGGGTCAGGGAGTGGGACAGGTGTCACTTTGATTATACAAGTATATAAT
CGAAGACATACCACCAGTGATCTACACCCAGAAGTGGTGGTAGTGGTGGT
CTCAGATTTGTGGGAGTCATAGAGGAATTGGAGAACTCTAGGGAGGCAGG
CTACTACATAATTAAGGAGTCTTCCCAAAATCATTCCAAAAATCATGGGT
CAGGGAGTGAGATAGGTGTCATTTTGATCATACAAGTATATAATCTAAGA
CATACCACCAGTGATCCACACCCAGAAATGGTGGTAGTGGTGGTCTCAGA
TTTGTGGGAGTCATAGAAGAATTGGAGAACTCTAGGGAGGCAGGCTACTG
CATAATAAAGGAGTCTGTCCAAAATCATCTCCCTGAATTTGTGCTTGGTA
CCTGCAGATATGTCTCCAGTGCTGTCCAGACATTCCAGTTTTGCAGGGGT
GCTCCCTTCTGAAGGTGTTCTTTAATTCTCTTCTCTCTTTCTTCAGGTTT
CAGTTGAGGGTGGGCCTGAGCCCTGGGAATCCCCAGGACAGTCTCATGAA
CATAGACTGACCAGAGATTGCAGGTGGCCTCAGTTGTATGTGGTGGGAAC
TCCCAACCCCTGCACTGCTGATTGTGGCCCAGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no059_e24.b1 MSMg01no059_e24.b1 CHROMAT_FILE:
MSMg01no059_e24.b1 PHD_FILE: MSMg01no059_e24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:47 2005
         (556 letters)



>mm_chr6_42709218_42710171
          Length = 954

 Score =  971 bits (502), Expect = 0.0
 Identities = 535/546 (97%), Gaps = 2/546 (0%)
 Strand = Plus / Minus

                                                                       
Query: 8   gtttttttgtttttttgttttcttgtaaacagtggtgaaactgagcagtattcaccgagc 67
           |||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 751 gttttttt-tttttttttttttttgtaaacagtggtgaaactgagcagtattcaccgagc 693

                                                                       
Query: 68  cttaataagtaaaatacagtattttggaaagtgcagttgaactacaccttagaaattcac 127
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 692 cttaataagtaaaatacagtattttggaaagtacagttgaactacaccttagaaattcac 633

                                                                       
Query: 128 aaagctgctctaatggctaaagtgtatgcttgtatggaacatttttttttctttgctgag 187
           |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct: 632 aaagctgctctaatggctaaagcgtatgcttgtatggaaca-ttttttttctttgctgag 574

                                                                       
Query: 188 catttaaaaattaaacaatgttaaatgggaggtttgaactttgtgagatgaaggttcaga 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 catttaaaaattaaacaatgttaaatgggaggtttgaactttgtgagatgaaggttcaga 514

                                                                       
Query: 248 agaatccactgtgctcagtcatcagtttctgctgatgctccataattcatcaaggtccag 307
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 agaagccactgtgctcagtcatcagtttctgctgatgctccataattcatcaaggtccag 454

                                                                       
Query: 308 aaaaaaagctgcagctttacatgacaatgaactaagaatacagagagagtaggagagatg 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aaaaaaagctgcagctttacatgacaatgaactaagaatacagagagagtaggagagatg 394

                                                                       
Query: 368 ttaccagaaaagaacaattttctcagttaagttgttatcattgtttcacactagaggaaa 427
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttaccagaaaagaacaattttgtcagttaagttgttatcattgtttcacactagaggaaa 334

                                                                       
Query: 428 ttatgtccctgtgattctcgctttattcagtaattatcggttagagcaaacatcaagacg 487
           |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ttatctccctgtgattatcgctttattcagtaattatcggttagagcaaacatcaagacg 274

                                                                       
Query: 488 caaacgttctgtcaatgacacacacgcaaaaggtgttcagattcctcgaacagttttgca 547
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 273 caaacgttctgtcaatgacacacatgcaaaaggtgttcagattcctcgaacagttttgca 214

                 
Query: 548 tgactt 553
           ||||||
Sbjct: 213 tgactt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 954
Length adjustment: 10
Effective length of query: 546
Effective length of database: 944
Effective search space:   515424
Effective search space used:   515424
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no059_e24.g1 MSMg01no059_e24.g1 CHROMAT_FILE:
MSMg01no059_e24.g1 PHD_FILE: MSMg01no059_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:47 2005
         (591 letters)



>mm_chr6_42575678_42576669
          Length = 992

 Score = 1108 bits (573), Expect = 0.0
 Identities = 588/593 (99%), Gaps = 3/593 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttccattttcatgtatattcaaaaaaatcatgggtcagggagtgggacaggtgtcactt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7   tttccattttcatgtatattcaaaaaaatcatgggtcagggagtgggacaggtgtcactt 66

                                                                       
Query: 61  tgattatacaagtatataatcgaagacataccaccagtgatctacacccagaagtggtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67  tgattatacaagtatataatcgaagacataccaccagtgatctacacccagaagtggtgg 126

                                                                       
Query: 121 tagtggtggtctcagatttgtgggagtcatagaggaattggagaactctagggaggcagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 tagtggtggtctcagatttgtgggagtcatagaggaattggagaactctagggaggcagg 186

                                                                       
Query: 181 ctactacataattaaggagtcttcccaaaatcattccaaaaatcatgggtcagggagtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 ctactacataattaaggagtcttcccaaaatcattccaaaaatcatgggtcagggagtga 246

                                                                       
Query: 241 gataggtgtcattttgatcatacaagtatataatc-taagacataccaccagtgatccac 299
           |||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||
Sbjct: 247 gataggtgtcattttgattatacaagtatataatcgta-gacataccaccagtgatccac 305

                                                                       
Query: 300 acccagaaatggtggtagtggtggt-ctcagatttgtgggagtcatagaagaattggaga 358
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 306 acccagaaatggtggtagtggtggttctcagatttgtgggagtcatagaagaattggaga 365

                                                                       
Query: 359 actctagggaggcaggctactgcataataaaggagtctgtccaaaatcatctccctgaat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 actctagggaggcaggctactgcataataaaggagtctgtccaaaatcatctccctgaat 425

                                                                       
Query: 419 ttgtgcttggtacctgcagatatgtctccagtgctgtccagacattccagttttgcaggg 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ttgtgcttggtacctgcagatatgtctccagtgctgtccagacattccagttttgcaggg 485

                                                                       
Query: 479 gtgctcccttctgaaggtgttctttaattctcttctctctttcttcaggtttcagttgag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gtgctcccttctgaaggtgttctttaattctcttctctctttcttcaggtttcagttgag 545

                                                                
Query: 539 ggtgggcctgagccctgggaatccccaggacagtctcatgaacatagactgac 591
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 546 ggtgggcctgagccctgggaatccccaggacggtctcatgaacatagactgac 598


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 591
Length of database: 992
Length adjustment: 10
Effective length of query: 581
Effective length of database: 982
Effective search space:   570542
Effective search space used:   570542
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |