Query= MSMg01no059_h10.b1 MSMg01no059_h10.b1 CHROMAT_FILE:
MSMg01no059_h10.b1 PHD_FILE: MSMg01no059_h10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:58 2005
(548 letters)
>mm_chr6_45227748_45228696
Length = 949
Score = 934 bits (483), Expect = 0.0
Identities = 531/549 (96%), Gaps = 7/549 (1%)
Strand = Plus / Minus
Query: 4 gaattctttcact---tccacaattagaatttacctataggtactcaatacagaaatata 60
||||||||||| | | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 gaattctttcatttaat--acaattagaatttacctataggtactcaatacagaaatata 692
Query: 61 cctacactgaagtgtttacataccgtttaatgatggctaattcagtctttatgtttattc 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 691 cctacactgaagtgtttacatactgtttaatgatggctaattcagtctttatgtttattc 632
Query: 121 acagcacaactaaagtgaataccttgaaaatatgttaaggtttgtatcaaaataaaaggc 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 631 acagcacaactaaagtgaataccttgaaaatatgttaaggtttgtataaaaataaaaggc 572
Query: 181 tattcaagtaacagcaggcaattaaattgatatacctgttgattgactttgcttcatgta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 tattcaagtaacagcaggcaattaaattgatatacctgttgattgactttgcttcatgta 512
Query: 241 taatgtcagatatcaaaagtaatcagaaaacattgtaaattacaactaatttgattgagt 300
|||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct: 511 taatgtcagatatcaaaagtaatcagaaaacattaaaaattacaattaatttgattgagt 452
Query: 301 taaacaacagaacataacatgctcactttaccatttcctgtttctcataatcattattgt 360
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 451 taaacaacagaacataacatgctcactttaccatttcctgtttctcatactcattattgt 392
Query: 361 atatttaatcaaatcctaaactccaataaaacaaaaaatcatatataataaaatgacaaa 420
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct: 391 atatttaatcaactcctaaactccaataaaaccaaaaatcatatataataaaatgaccaa 332
Query: 421 ctttaagttgtgg-aaatttcgagatacaactttgtatgagtatgattattaaatgtttt 479
||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 331 ctttaagttgtggaaaattt-gagatacaactttgtatgagtatgattattaaatgtttt 273
Query: 480 cataaagtattatgcctttacactttagtctgaacactgaggcactttttccatattttt 539
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 272 cataaagtattatgcctttacactttagtctgaagactgaggcactttttccatattttt 213
Query: 540 cctgttaat 548
|||||||||
Sbjct: 212 cctgttaat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 949
Length adjustment: 10
Effective length of query: 538
Effective length of database: 939
Effective search space: 505182
Effective search space used: 505182
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_h10.g1 MSMg01no059_h10.g1 CHROMAT_FILE:
MSMg01no059_h10.g1 PHD_FILE: MSMg01no059_h10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:58 2005
(499 letters)
>mm_chr6_45078139_45079037
Length = 899
Score = 944 bits (488), Expect = 0.0
Identities = 496/499 (99%)
Strand = Plus / Plus
Query: 1 atttgtgagaagatgtatttcaagagttaacagaatgtatttgattaatttcttattttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttgtgagaagatgtatttcaagagttaacagaatgtatttgattaatttcttattttt 260
Query: 61 ggaagtttcttagtttctttacattggccatgcttagtgacctggaaagagcccttcaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaagtttcttagtttctttacattggccatgcttagtgacctggaaagagcccttcaaa 320
Query: 121 cttctaccaatggcagagatcatacaccttctgtgtagtatcaaagctataggatataat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttctaccaatggcagagatcatacaccttctgtgtagtatcaaagctataggatataat 380
Query: 181 ctctggaacactgagtgatatcactacatgaaccactttctccaatgaatactttctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctggaacactgagtgatatcactacatgaaccactttctccaatgaatactttctctt 440
Query: 241 ccacaagcaaagcatttttcctcaaacagtgtcagtttctccttgtgttcatcacaggaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacaagcaaagcatttttcctcaaacagtgtcagtttctccttgtgttcatcacaggaa 500
Query: 301 aacattcagttaccgatgaagggaaacatttaggctgaaaagactttgttttgccttttt 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aacattcaggtaccgatgaagggaaacatttaggctgaaaagactttgttttgccttttt 560
Query: 361 ttctttggcaccttagaatatagtaactatttaaaaataatattaaggttaaaatgatat 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttctttggcaccttagaatatagtaactatttaaaaataatattaaggttaaaatgatat 620
Query: 421 ggaagagganagatttgctttccctgaactcacacaattttattccttgtagcaaatagc 480
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaagaagaaagatttgctttccctgaactcacacaattttattccttgtagcaaatagc 680
Query: 481 atcataaaagataattctg 499
|||||||||||||||||||
Sbjct: 681 atcataaaagataattctg 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
