Query= MSMg01no059_i02.b1 MSMg01no059_i02.b1 CHROMAT_FILE:
MSMg01no059_i02.b1 PHD_FILE: MSMg01no059_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:01 2005
(476 letters)
>mm_chr6_54601457_54602327
Length = 871
Score = 789 bits (408), Expect = 0.0
Identities = 453/470 (96%), Gaps = 6/470 (1%)
Strand = Plus / Minus
Query: 4 ggaattccttttcatgcccctgaggcatgcctagtacctcagaaccagccaataaacata 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ggaattccttttcatgcaaatgaggcatgcctagtacctcagaaccagccaataaacata 721
Query: 64 cacttatctc-aaaaaaaccttacccactctccaaggtttatacagcccgtattcacccc 122
|||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 720 cacttatctcaaaaaaaaccttactcactccccaaggtttatacagcccgtattcacccc 661
Query: 123 caataaaggagaactgttttactcaaaaccatctcagagaaggctgtttgtccctgcact 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 caataaaggagaactgttttactcaaaaccatctcagagaaggctgtttgtccctgcact 601
Query: 183 ggaggtcctgtggaacccacccacctggctgagggtcagtccttcaagtcttgcctccta 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggaggtcctgtggaacccacccacctggctgagggtcagtccttcaagtcttgcctccta 541
Query: 243 agcaactgtgcctggacacctgaggccagaagcagaggcaggccggcagtcagttacttt 302
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 540 agcaactgtgcctggacacctgaggcgggaagcagaggc----cggcagtcagttacttt 485
Query: 303 aaaaaaatccctttacttttgctaacctaagcctattcctctgtgttatcaatttacttt 362
|||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 484 aaaaaa-tccctttacttttgctaacctaagcctgttcctctgtgttatcaatttacttt 426
Query: 363 tcaaagatgttaacatctttatcttcttttggggggcagaatttcactacatggttctgt 422
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 425 tcaaagatgttaacatgtttatcttcttttggggggcagaatttcactacatggctctgt 366
Query: 423 cttagttagggtttctatggctacaatgaaacaccatgaccaaagaaacc 472
|||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 cttagtaagggtttctatggctacaatgaaacaccatgaccaaagaaacc 316
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 476
Length of database: 871
Length adjustment: 10
Effective length of query: 466
Effective length of database: 861
Effective search space: 401226
Effective search space used: 401226
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_i02.g1 MSMg01no059_i02.g1 CHROMAT_FILE:
MSMg01no059_i02.g1 PHD_FILE: MSMg01no059_i02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:01 2005
(616 letters)
>mm_chr6_54455918_54456933
Length = 1016
Score = 951 bits (492), Expect = 0.0
Identities = 568/618 (91%), Gaps = 43/618 (6%)
Strand = Plus / Plus
Query: 1 tctgcatgacagttcaggatggttggcttcagtcagtaaaaacatgtgtgacacacacca 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 201 tctgcatgacagttcaggatggttggcttcagtcagtaaaaacacgtgtgacacacacca 260
Query: 61 caggacaggagttggggctcagagccatgtggaatgaaatgccgcggctgcgggaggcac 120
|||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct: 261 caggacaggagttggggctcagcgccatgtagaatgaaatgccgcggctgcgggaggcat 320
Query: 121 gggagagc-agggatgctcgagcaatgcctgccacacctctcccaccatggtgtgctttc 179
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagagccagg-atgctcgagcaatgcctgccacacctctcccaccatggtgtgctttc 379
Query: 180 tcccaaggctgaactcacagctgaaattagttgtgatacaagaactcaagtcagtaattt 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tcccaaggctgaactctcagctgaaattagttgtgatacaagaactcaagtcagtaattt 439
Query: 240 caagacacgcacacctggctgccctgaggtccttccagagtagcatcacctgcgtcaatg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 caagacacgcacacctggctgccctgaggtccttccagagtagcatcacctgcgtcaatg 499
Query: 300 ttcgatgacagtagttttgtggtgacagttattttcacagctactgattcatctgagagt 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttcgatgacagtaattttgtggtgacagttattttcacagctactgattcatct------ 553
Query: 360 aagggagcgtcaccaccaagctcctcttcatctgagagtaagggagcgtcaccaccgagc 419
||| ||||||||||||||||||||||||
Sbjct: 554 aag---------------------------------agtaagggagcgtcaccaccgagc 580
Query: 420 tcct-ctaggcgtacagctgcttcatcagcttgtgaggccgactcctacagacactggag 478
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 tc-tactaggcgtacagctgcttcatcagcttgtgaggccgactcctacagacactggag 639
Query: 479 cttgtgttgggctaagtctccacagcgtttatcagatgcttagctagcgttcaggcatcc 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 cttgtgttgggctaagtctccacagcgtttatcagatgcttagctagcgttcaggcatcc 699
Query: 539 caagaacgagcaaagactatttccactttactaccttacgtagacactcgggtgtctgcc 598
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 caagaatgagcaaagactatttccactttactaccttacgtagacactcgggtgtctgcc 759
Query: 599 cccagctaggctgccatt 616
||||||||||||||||||
Sbjct: 760 cccagctaggctgccatt 777
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
