Query= MSMg01no059_n15.b1 MSMg01no059_n15.b1 CHROMAT_FILE:
MSMg01no059_n15.b1 PHD_FILE: MSMg01no059_n15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:27 2005
(557 letters)
>mm_chr6_18223337_18224292
Length = 956
Score = 1054 bits (545), Expect = 0.0
Identities = 554/557 (99%), Gaps = 1/557 (0%)
Strand = Plus / Plus
Query: 1 gctcttaaccaatagcaattgctgaagtgacttcagaggtgtaaagccaagacactaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gctcttaaccaatagcaattgctgaagtgacttcagaggtgtaaagccaagacactaaga 260
Query: 61 gtgtgtgtacttcgatgttggtcatattgaatttagaaatgggtgtggaaggcttagata 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtgtgcacttcgatgttggtcatattgaatttagaaatgggtgtggaaggcttagata 320
Query: 121 aagacgctagaaaaaaatcaactgtggattgttccattgcaggtggctgcttctttattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagacgctagaaaaaaatcaactgtggattgttccattgcaggtggctgcttctttattt 380
Query: 181 gtgttatggttgcttaaaaagtgagtatgccacactttatgtggattgtgttttgtttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgttatggttgcttaaaaagtgagtatgccacactttatgtggattgtgttttgtttat 440
Query: 241 atttagaggttatataactattttaatatatactatgttcattacacccttccatattcc 300
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttagaggttata-aactattttaatatatactatgttcattacacccttccatattcc 499
Query: 301 tgctgattatgaggggagaaaccatgtttcaataattcttcaatttctgaggagactggg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgctgattatgaggggagaaaccatgtttcaataattcttcaatttctgaggagactggg 559
Query: 361 tcccagaacaaagataccaaattctgcactcgtgctccatgtgtaaaactgttttttaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcccagaacaaagataccaaattctgcactcgtgctccatgtgtaaaactgttttttaca 619
Query: 421 catacaatacaatagtattttgcatatagcctaggcatatcaccacatatactttaaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 catacaatacaatagtattttgcatatagcctaggcatatcaccacatatactttaaaac 679
Query: 481 atttctagattgatatgatgcccagtataatgtaattttcatgtaagtagttatatcctt 540
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttctagatttatatgatgcccagtataatgtaattttcatgtaagtagttatatcctt 739
Query: 541 tagagaaatgatgataa 557
|||||||||||||||||
Sbjct: 740 tagagaaatgatgataa 756
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 956
Length adjustment: 10
Effective length of query: 547
Effective length of database: 946
Effective search space: 517462
Effective search space used: 517462
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_n15.g1 MSMg01no059_n15.g1 CHROMAT_FILE:
MSMg01no059_n15.g1 PHD_FILE: MSMg01no059_n15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:27 2005
(538 letters)
>mm_chr6_18337890_18338829
Length = 940
Score = 978 bits (506), Expect = 0.0
Identities = 531/540 (98%), Gaps = 2/540 (0%)
Strand = Plus / Minus
Query: 1 tccctaaagtttgcctgacacagttttaccttactgtgcaagttctcaacaccagtctag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tccctaaagtttgcctgacacagttttaccttactgtgcaagttctcaacaccagtctag 681
Query: 61 gctgaatctggcattgctcatggtgtttgggtagagtttcaagatggctttggatagaaa 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gctaaatctggcattgctcatggtgtttgggtagagtttcaagatggctttggatagaaa 621
Query: 121 aagagccttaccaagcgggttgctaaagagaataagtcattcccagtgttgaaaacagat 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aagagccttaccaagagggttgctaaagagaataagtcattcccagtgttgaaaacagat 561
Query: 181 attcatgcagctca--gtgcaggtaggagttctagggcctaggcacggtgtttagaaagg 238
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 560 attcatgcagctcagtgtgcaggtaggagttctagggcctaggcacggtgtttagagagg 501
Query: 239 gttgtatagtatatatcaagaggcgtcccaaggtgctcagttattatgcttgcctgtctt 298
||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 500 gttgtatagcacaaatcaagaggtgtcccaaggtgctcagttattatgcttgcctgtctt 441
Query: 299 ggtatcagtctaatctttctgtcctcaaagtacaaattatgtaattcatgttcttgattt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggtatcagtctaatctttctgtcctcaaagtacaaattatgtaattcatgttcttgattt 381
Query: 359 gcatttgcacaaaacctaaatggctgaggttgaattatggcttggttgttttaggaaatg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcatttgcacaaaacctaaatggctgaggttgaattatggcttggttgttttaggaaatg 321
Query: 419 gaacatccgaatgctattatttccatgagaactgctttctggtgggaaccattgccaaag 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gaacatccgaatgctattatttccatgagaactgctttctggtgggaaccattgccaaag 261
Query: 479 cctgtctccagggctctgacctgctggtacagcaacacttccgctgggttcagctgcgct 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 cctgtctccagggctctgacctgctggtacagcaacacttccgctgggttcagctgcgct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 940
Length adjustment: 10
Effective length of query: 528
Effective length of database: 930
Effective search space: 491040
Effective search space used: 491040
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
