BAC Information

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BAC

Clone NameMSMg01-060G24
Chromosome6 (Build37)
Map Location 32,631,756 - 32,698,192
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620104, 1700012A03Rik, Plxna4
Downstream geneChchd3, LOC100039118, Gm1401, Exoc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060G24.T7 (MSMg01no060_g24.b1)MSMg01-060G24.TJ (MSMg01no060_g24.g1)
ACCAG286881AG286882
length703702
length of high quality
(start - end)
608 (47 - 654)299 (134 - 432)
definitionCHROMAT_FILE: MSMg01no060_g24.b1 PHD_FILE: MSMg01no060_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:10 2005CHROMAT_FILE: MSMg01no060_g24.g1 PHD_FILE: MSMg01no060_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,631,756 - 32,632,359)(32,697,894 - 32,698,192)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATTCACATTGATAAATGCCTCAATCCTCGGTTCCTTTTAAAGTC
AAAAATTGGACCATGTTATTACTAAGATCCTTCTAGCTGCTGCTTCTTCA
TTCTCACCATCTTCTCTATGTATGTGCATGCATGTACATCTCTATATAGA
TGTGTGCATGTATATGTGGAGTCCATAGGTCAACTTCAGGTGTTGTTCCT
CAGGGGTTGTCCATCTAGGTTCTTTGGTTTGGAGACAGGTCTCTTACTGG
TCTGCCTAGTCCCAAGAACTCTACTTTCTCTGCCTCCCCCATATTAGAAG
TGCAAATTCACACCACCACACATTCACTTGGCTCTTTAAAGGCAAGATTT
GGGAACTCATGCTTGCATGGCAAGTGCTTTACCAACTAAGCCATCATCAT
AGCTCATCTCTACTTCTTGGTCTTGTGCCTAATGGTTTCCAGTGCTTCTT
GGCAGTACTCAGGAGAATCTTTGGGCAACTTTCAGTATTTCCAAAAACAC
AACAGAAATAGTTTGTTGGAGATAAATTTGCTTAGTTATATTAAAACATC
ATGTTTTGATTTATAGCCCAATGAGAAAACAATGGTCAGAGACTAATCAA
AAGCTCTGACTGGCAGTTGATTTTTATTAATAGAAGGTAGAGACATAATC
ATA
AACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCATAATCACAAATCACATGTG
AAGTGAGGTAACTGGGCTGGCGAGCTGGCTTACCAGCTAAAGGGTGCTTG
TTGCTCTTGCAGAGAACCAAGTTCAGTTCCTAGCATTCGTGTCTGGTGGC
TCACAACCACCTGTAACTCCAGCTCCAGCTCTGACTCTCTCTTCTGGCCT
TAGCAGGCATCCACCAACACACAGGCACATAAATACAAATAAATCTTTAA
AAAGAAAGGAAGAAAATGCACAGCGCTGGCTTTGTAGAGATTTTTTTGTT
AGCGTGGGAGCTCCGCTTGCTCTCACAGACTACTGGCTCAAGGCCATTGT
CTGAACTCCACATCAGAGAGGTATATATTCTGGGCGGGCGACCTCCACAA
CTGATCTGGGGGGCAATAGCCTTGGGTTCTGACAGCCATTCTGTCCTACC
TGTGAGGCGAATGCCCAGGTCACTTCCTGACCATCTCCATGCCTTTGACT
CCAGTGTGACAAGACGCCAGAGGGGGTCTCCAAAACACGCGACGGACAGG
ACCTCCCCAGGCCTGAACCACCGCACAATCTTCATTTTTTCTCTTGAACG
GCACCACGTATTATGCCCCCCCGGCCTTACCCGCAACGTTCCCCCACCCC
CC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_g24.b1 MSMg01no060_g24.b1 CHROMAT_FILE:
MSMg01no060_g24.b1 PHD_FILE: MSMg01no060_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:10 2005
         (608 letters)



>mm_chr6_32631552_32632559
          Length = 1008

 Score = 1145 bits (592), Expect = 0.0
 Identities = 601/604 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcacattgataaatgcctcaatcctcggttccttttaaagtcaaaaattgga 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcattcacatagataaatgcctcaatcctcggttccttttaaagtcaaaaattgga 264

                                                                       
Query: 65  ccatgttattactaagatccttctagctgctgcttcttcattctcaccatcttctctatg 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 ccatgttattactaagatccttctagctgctgcttcttcatcctcaccatcttctctatg 324

                                                                       
Query: 125 tatgtgcatgcatgtacatctctatatagatgtgtgcatgtatatgtggagtccataggt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 tatgtgcatgcatgtacatctctatatagatgtgtgcatgtatatgtggaggccataggt 384

                                                                       
Query: 185 caacttcaggtgttgttcctcaggggttgtccatctaggttctttggtttggagacaggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caacttcaggtgttgttcctcaggggttgtccatctaggttctttggtttggagacaggt 444

                                                                       
Query: 245 ctcttactggtctgcctagtcccaagaactctactttctctgcctcccccatattagaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctcttactggtctgcctagtcccaagaactctactttctctgcctcccccatattagaag 504

                                                                       
Query: 305 tgcaaattcacaccaccacacattcacttggctctttaaaggcaagatttgggaactcat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcaaattcacaccaccacacattcacttggctctttaaaggcaagatttgggaactcat 564

                                                                       
Query: 365 gcttgcatggcaagtgctttaccaactaagccatcatcatagctcatctctacttcttgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcttgcatggcaagtgctttaccaactaagccatcatcatagctcatctctacttcttgg 624

                                                                       
Query: 425 tcttgtgcctaatggtttccagtgcttcttggcagtactcaggagaatctttgggcaact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tcttgtgcctaatggtttccagtgcttcttggcagtactcaggagaatctttgggcaact 684

                                                                       
Query: 485 ttcagtatttccaaaaacacaacagaaatagtttgttggagataaatttgcttagttata 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcagtatttccaaaaacacaacagaaatagtttgttggagataaatttgcttagttata 744

                                                                       
Query: 545 ttaaaacatcatgttttgatttatagcccaatgagaaaacaatggtcagagactaatcaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttaaaacatcatgttttgatttatagcccaatgagaaaacaatggtcagagactaatcaa 804

               
Query: 605 aagc 608
           ||||
Sbjct: 805 aagc 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no060_g24.g1 MSMg01no060_g24.g1 CHROMAT_FILE:
MSMg01no060_g24.g1 PHD_FILE: MSMg01no060_g24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:10 2005
         (299 letters)



>mm_chr6_32697520_32698218
          Length = 699

 Score =  563 bits (291), Expect = e-165
 Identities = 297/299 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagctaaagggtgcttgttgctcttgcagagaaccaagttcagttcctagcattcgtgtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 cagctaaagggtgcttgttgctcttgcagagaaccaagttcagttcctagcattcgtgtc 614

                                                                       
Query: 61  tggtggctcacaaccacctgtaactccagctccagctctgactctctcttctggccttag 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 613 tggtggctcacaaccacctgtaactccagctccagctctgactctgtcttctggccttag 554

                                                                       
Query: 121 caggcatccaccaacacacaggcacataaatacaaataaatctttaaaaagaaaggaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 caggcatccaccaacacacaggcacataaatacaaataaatctttaaaaagaaaggaaga 494

                                                                       
Query: 181 aaatgcacagcgctggctttgtagagatttttttgttagcgtgggagctccgcttgctct 240
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 493 aaatgcacagcgctggctttgtagtgatttttttgttagcgtgggagctccgcttgctct 434

                                                                      
Query: 241 cacagactactggctcaaggccattgtctgaactccacatcagagaggtatatattctg 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 cacagactactggctcaaggccattgtctgaactccacatcagagaggtatatattctg 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)