Query= MSMg01no060_k13.b1 MSMg01no060_k13.b1 CHROMAT_FILE:
MSMg01no060_k13.b1 PHD_FILE: MSMg01no060_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:26 2005
(557 letters)
>mm_chr6_62541440_62542396
Length = 957
Score = 988 bits (511), Expect = 0.0
Identities = 544/555 (98%), Gaps = 4/555 (0%)
Strand = Plus / Plus
Query: 5 gaattcaggcatgtcccaaaggacacagcactacttactttgatttctctaatagccttt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaggcatgtgccaaaggacacagcactacttactttgatttctctaatagccttt 264
Query: 65 ttcaaagaccagtgtagtaatttgcaattttcttgatcttttccattgaagtgcacacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcaaagaccagtgtagtaatttgcaattttcttgatcttttccattgaagtgcacacag 324
Query: 125 ttgt-gaaataggcattttacccaaacttcttggacactgcagtgcttagtaatcagcat 183
|| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 tt-tagaaataggcattttaccaaaacttcttggacactgcagtgcttagtaatcagcat 383
Query: 184 gcttgctgaatgaaacatgaaagtatgggataggggcatgcaattgttatttattaacac 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gcttgctgaatgaaacatgaaagtatgggataggggcatgcaattgttatttattaacac 443
Query: 244 caataagcaatgcagaaaaatgaatgaaatttttatgaaatttctatatgagccaaatgt 303
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 caataagcaatgcagagaaatgaatgaaatttttatgaaatttctatatgagccaaatgt 503
Query: 304 tttacacgttttggagttgttcattaggtatactaaaatgaaaatgcttgattggacagc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttacacgttttggagttgttcattaggtatactaaaatgaaaatgcttgattggacagc 563
Query: 364 aaagcgcacc-gcagggacatatgtttaggtgttggggaaaggatttatgatcattttat 422
|||| | || | |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 564 aaagtg-acttggagggacatatgtttaggtgttggggaaaggctttatgatcattttat 622
Query: 423 ataaattgctctaagattatgatatcatttttgatgtttaatatataatgcttaatacta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ataaattgctctaagattatgatatcatttttgatgtttaatatataatgcttaatacta 682
Query: 483 taaattaggttttttttccttaaaggaataatggtgcttgctaaaaggaaaatgctgctt 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 taaattaggttttttttccttaaaggaataatggtgcttgctaaaaggaaaatgctgctt 742
Query: 543 tttatcaaatgtcat 557
|||||||||||||||
Sbjct: 743 tttatcaaatgtcat 757
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 957
Length adjustment: 10
Effective length of query: 547
Effective length of database: 947
Effective search space: 518009
Effective search space used: 518009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no060_k13.g1 MSMg01no060_k13.g1 CHROMAT_FILE:
MSMg01no060_k13.g1 PHD_FILE: MSMg01no060_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:26 2005
(632 letters)
>mm_chr6_62630018_62631050
Length = 1033
Score = 1162 bits (601), Expect = 0.0
Identities = 625/633 (98%), Gaps = 3/633 (0%)
Strand = Plus / Minus
Query: 1 tttctatataacaaagtctcatgaggaaagtatggtggtctatcggtttgtccttaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tttctatataacaaagtctcatgaggaaagtatggtggtctatcggtttgtccttaagtt 678
Query: 61 tctgctacctgtggctagagggcattctcaggtaagaaattccatagaatggtcctgact 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 tctgctacctgtggctagagggcattctcaggtaagaaattccatagaatggtcctgact 618
Query: 121 aaagtccatatataatatttaataaagcttaccttaaatttggcactaaataatgaag-t 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 617 aaagtccatatataatatttaataaagcttaccttaaatttggcactaaataatgaagtt 558
Query: 180 tttttctggtaaatcataggattaacaaccataagtctatgtggatatcattaatatcct 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 tttttctggtaaatcataggattaacaaccatacgtctatgtggatatcattaatatcct 498
Query: 240 taatatttccctccttcttaggctagttataatattttgcagcttaattgacaaatacta 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 taatatttccctccttcttaggctagttataatattttgcagcttaattgacaaatacta 438
Query: 300 ataaaaactaaattatcagtcattatacataggtcacaacaattgattattttctgggac 359
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct: 437 ataaaaactaaattatcagtcattatacataggtcacaataattgatcattttctgggac 378
Query: 360 tatactgtttacattaataagggttttgcccatgataacaattttccatacatttctaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatactgtttacattaataagggttttgcccatgataacaattttccatacatttctaaa 318
Query: 420 tagaaatatgtgtgtgtgtcctaatatcatgttttctttaattttgttttgcaaatttgt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tagaaatatgtgtgtgtgtcctaatatcatgttttctttaattttgttttgcaaatttgt 258
Query: 480 tttttcttcttgggtatcaggatatcaattgcaaaaataaataaacaaccaaccaaccaa 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 257 tttttcttcttgggtatcaggatatcaattgcaaaaataaataaacaaccaaccaacc-a 199
Query: 540 aacaaaa-taaataaaacaaaacaaaacaaaacaagaattccagcatttactatgcaatt 598
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 accaaaacaaaataaaacaaaacaaaacaaaacaagaattccagcatttactatgcaatt 139
Query: 599 tataaaaattaatttattttttacactccatat 631
|||||||||||||||||||||||||||||||||
Sbjct: 138 tataaaaattaatttattttttacactccatat 106
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1033
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1023
Effective search space: 636306
Effective search space used: 636306
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
