BAC Information

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BAC

Clone NameMSMg01-060L21
Chromosome6 (Build37)
Map Location 99,109,912 - 99,110,252
singlet/doubletsinglet
Overlap geneFoxp1
Upstream geneGm765, LOC666019, LOC665963, LOC665979
Downstream geneEif4e3, Gpr27, Prok2, LOC384466, LOC626503, LOC100043703
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060L21.T7 (MSMg01no060_l21.b1)MSMg01-060L21.TJ (MSMg01no060_l21.g1)
ACCAG287115AG287116
length818752
length of high quality
(start - end)
---341 (92 - 432)
definitionCHROMAT_FILE: MSMg01no060_l21.b1 PHD_FILE: MSMg01no060_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:32 2005CHROMAT_FILE: MSMg01no060_l21.g1 PHD_FILE: MSMg01no060_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTGCGGCCGCTGTACGAGTCACTTTTCCAAAAGATCCGCGANATTCTTGA
TTTTCCGGGTAGCGTTTGACATGTGCTCACTTGGCTGTCGGACACTGGGC
TTAACCTGGCCTCGTTCGTCAATGGCCGGTGTGGTTCTTTCATCCGGTGC
AGGTGCCATGGAAGGGCCTGCTGGATGGGGTATTTGGTTGGTTTCGGATT
GCACACATACCAAAGGATGTGGCTCCAACGCTACTTGTTCGTGTTAATGT
TGTTTTCGAAAGTGGTTGTGGGACTGAGCCTTCTTCTATGTTTGTTTGTC
GTGGGNGGCAACAACATGCATGACATAGTTCGCTTGCAGGTGAAAGTGGG
CGGGGTAGGATAGTGGACGGGATGTACTTTAAGGGAACATATTTGGGCGG
ACATAATGGTTGCCCGTACTGACACCTGGGCACTTNCACCGGCGGGGACT
GGTGTTGCCTCGCTTACACACAAGGGGGCCGGGCTGGGGTAGTGGTCCCA
CACAGGTGGTGGTCGCCGTTGGCGGCCCACCCACGGGAACCCCACGGGGG
TTGGGGCTCACCTGGGCACCCGTTGGCACAACCGGCGTGGGGACCAAAAC
AAGGGGAGAAACGGCAAGGGGGGGCACAGCGGGGGGCGGGAGGGCCATGG
ACACAGGAGCTCGTGCCTTGGGGGGAACACGGGGTCACTCTTGGANGGCA
CGCTATGGTGGGTCAACCCATGTCCCCAAGGGACACTGTGGTCACCACCA
CCAGGCGGGGTCGCCCGGGCTATTCTGGGGATTTATACGGCGAACCGGGC
CTACCCCCGGGGGACACC
CCCTCCCTTCNTNCCAAGTATGAAXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTACTGCG
GTAGTCACACAAAACCACGGATAAAATTTCAATATCTGCAGGCCACAGTT
GAGTAAACAGTTGCACTGAAATTTAATTCCTGTTGACTTTTCCCCCATTC
CTAGCCAGGGGCACATTCTGATTCCGTAGTACAAAGACAACAGGGGTTAC
AGCTTTGATTAATGTAGGACAGTGGAAGAGAGAACTGTAAAATATGTCAG
AAGTCCATGGAACACAAAGATCTGGCTTCAAGCTGCCTGGTGTAAAATCG
AGCTAATTACGCCGTGAGTTACAAGGAATGGTTCTCAATATCCTTCTTGC
ACAGAAGCCTTTTGGTGTTAGGTGATGGTGGGGGTGCCCCCCTTTGTCGA
ATAACCTCCGTTTCCCTCTACTTCCTACCCTCTATGAATATATATTAACT
CCCCTTTCCTTTTTCCGCCATCAGCCCCCCCCCCAACCATGCTTCCCTCT
ACTCACATATCCCCTCTTGGTCTGGTCCCCTGCTTTCCAATTGCGTGCAC
TGTGCTGTTTGTACCTAGTTACTGTTTCTCCCTCNTNTGTTCCCTGCTTG
CCTCCTTTCTGTGTTTGCTCTTGTTGTCCACATTTGTGCTCTTTCCGTAT
TGTCGTGAATGCGTGAATCNATTGCTGATACTGGTATCTATGGNCTGTGT
TT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_l21.g1 MSMg01no060_l21.g1 CHROMAT_FILE:
MSMg01no060_l21.g1 PHD_FILE: MSMg01no060_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:32 2005
         (341 letters)



>mm_chr6_99109712_99110452
          Length = 741

 Score =  629 bits (325), Expect = 0.0
 Identities = 337/341 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attactgcggtagtcacacaaaaccacggataaaatttcaatatctgcaggccacagttg 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 attactgtggtagtcacacaaaaccacggataaaatttcaatatctgcaggccacagttg 482

                                                                       
Query: 61  agtaaacagttgcactgaaatttaattcctgttgacttttcccccattcctagccagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 481 agtaaacagttgcactgaaatttaattcctgttgacttttcccccattcctcgccagggg 422

                                                                       
Query: 121 cacattctgattccgtagtacaaagacaacaggggttacagctttgattaatgtaggaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cacattctgattccgtagtacaaagacaacaggggttacagctttgattaatgtaggaca 362

                                                                       
Query: 181 gtggaagagagaactgtaaaatatgtcagaagtccatggaacacaaagatctggcttcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtggaagagagaactgtaaaatatgtcagaagtccatggaacacaaagatctggcttcaa 302

                                                                       
Query: 241 gctgcctggtgtaaaatcgagctaattacgccgtgagttacaaggaatggttctcaatat 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gctgcctggtgtaaaatcgagttaattacgccgtgagttacaaggaatggttctcaatat 242

                                                    
Query: 301 ccttcttgcacagaagccttttggtgttaggtgatggtggg 341
           ||||||||||| |||||||||||||||||||||||||||||
Sbjct: 241 ccttcttgcacggaagccttttggtgttaggtgatggtggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)