BAC Information

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BAC

Clone NameMSMg01-060M02
Chromosome6 (Build37)
Map Location 21,658,932 - 21,782,923
singlet/doubletdoublet
Overlap geneKcnd2, Tspan12
Upstream geneLOC100041343
Downstream geneLOC100041358, Ing3, A430107O13Rik, LOC667307, Wnt16, D6Wsu176e, LOC100040948, LOC100040959, LOC668018, LOC668022
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060M02.T7 (MSMg01no060_m02.b1)MSMg01-060M02.TJ (MSMg01no060_m02.g1)
ACCAG287125AG287126
length719780
length of high quality
(start - end)
201 (67 - 267)157 (81 - 237)
definitionCHROMAT_FILE: MSMg01no060_m02.b1 PHD_FILE: MSMg01no060_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:33 2005CHROMAT_FILE: MSMg01no060_m02.g1 PHD_FILE: MSMg01no060_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,782,723 - 21,782,923)(21,658,932 - 21,659,086)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCAGCCCCTTTTTCTGTTCTTATTTGAATGGCTCGTGCACAAGCCCTCAG
GACGTCTAGTTCTCTGCCTCTACTATTGCCTGCTCTAACCCAGTGTAGTT
TGGTTAAGTCAATACACCATGATTATAGTACTCTTGCTATGCTCTAAGAC
TTTGATAGCCTCCCCATTGGGTAGTGAAGTTTAACCAGCATCTGGAACTT
GCATCAAGCCCTTCTGTAGCCAAGCCTTCATCTGTCAGCCTTTACCTCTT
TTACCTACTTCCTTATTGTCTAGTTAAGGTGCATTTTTTTGATCTCTGGA
CATATTTTCTTCTCGTTTTCTCTGCTTTTATTCTTGCTGCCCCTTTAAGA
ATTCTTCTCTTACTATTTTTGCCTAGCTTTTACCATTCCTGTTAAACTTT
ATCTGACATCGTCATCTCCTGTACTACTACCGACCACCTCCATAACAGTA
CCAGCCAACGTTTTTAATATACTCCTCATGTTTCACACCGACGACTCTTA
CCCTATGAGTTATACCAACATTCCTTTCTCCCCACAATTCTTATGACATA
CCTCCCCATTTCAGCTCCATTTCTTATCTCACTCACCTCACACCGCCCAT
TTGCCCCAACACCCTCTATGATCTCTTTTTCCGCTATCCATTAATTCGCC
TTTTCCTACCTTCTCCCCC
ACCGACTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGTAGAAAAATCAAAGACAA
AAGAATTTGTTGTTAAAAAGGCAGAGTCCAAAGAAACCCAGTGAGTAATT
CTGAATAGAAAACCCTTTTGGGCGAGAATGCTTAGCCCATGGGCTGAAGG
CATGGCGACTCTTTCATCCTTCCTTCTCCATTTCTNAATATACACCTCCT
CGTCCTTAAAAGTCCCTCATTTACACTCCACGAGACCCTAGTTAAATATA
AGGGGGGGGGGGGGGCCCCCCCTACCCTTCCCCATTTTCCCCCCCCCCTA
CCTCGCCCCCCCTCCCCTCTCTCTTTTCCCCTTACCCCCGCCCCTCCCTC
TTTCTCCCCCCCCCTCTCCCCCTCTCGCCCTCGCCCCTTCCCTTCCCCTT
CCCTTTCCCCCCTCCACCTCCGCCCACCCCACCCCCACTTCCCCCCCCTA
CCCCCCGGTCCCCTCCTTCTCTCCCTCCCTCCCCCCCCCATTACTCCCCC
CTATCCACCCCCCCCCTTCCCCCCCCCCCCCCCCCCGTTTTCCCCCTCTG
CCCTCCCCCCAATCCCCCCACCCNGTTCTCCCCACCCTCCCCCCGGCCCC
CCACCCCCCCCCCCCCCCCCCTTGCGCCCCCCCCCTTACCACCATCCCTT
TTTCCCCCCACCTGCCCCCCCACCCCCCCTTATCCTTTCCCCCCAACCAC
CACCCCACCATCTTTCTCTACCCCACCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_m02.b1 MSMg01no060_m02.b1 CHROMAT_FILE:
MSMg01no060_m02.b1 PHD_FILE: MSMg01no060_m02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:33 2005
         (201 letters)



>mm_chr6_21782523_21783123
          Length = 601

 Score =  389 bits (201), Expect = e-113
 Identities = 201/201 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttatttgaatggctcgtgcacaagccctcaggacgtctagttctctgcctctactat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ttcttatttgaatggctcgtgcacaagccctcaggacgtctagttctctgcctctactat 342

                                                                       
Query: 61  tgcctgctctaacccagtgtagtttggttaagtcaatacaccatgattatagtactcttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tgcctgctctaacccagtgtagtttggttaagtcaatacaccatgattatagtactcttg 282

                                                                       
Query: 121 ctatgctctaagactttgatagcctccccattgggtagtgaagtttaaccagcatctgga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 ctatgctctaagactttgatagcctccccattgggtagtgaagtttaaccagcatctgga 222

                                
Query: 181 acttgcatcaagcccttctgt 201
           |||||||||||||||||||||
Sbjct: 221 acttgcatcaagcccttctgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no060_m02.g1 MSMg01no060_m02.g1 CHROMAT_FILE:
MSMg01no060_m02.g1 PHD_FILE: MSMg01no060_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:33 2005
         (157 letters)



>mm_chr6_21658732_21659288
          Length = 557

 Score =  277 bits (143), Expect = 3e-79
 Identities = 152/155 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtagaaaaatcaaagacaaaagaatttgttgttaaaaaggcagagtccaaagaaaccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtagaaaaatcaaagacaaaagaatttgttgttaaaaaggcagagtccaaagaaaccca 260

                                                                       
Query: 61  gtgagtaattctgaatagaaaacccttttgggcgagaatgcttagcccatgggctgaagg 120
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 gtgagtaattctgaatagaaaacccttttgggtgagaatgcttagcccatgggctgaagg 320

                                              
Query: 121 catggcgactctttcatccttccttctccatttct 155
           | ||| |||||||||||||||||||||||||||||
Sbjct: 321 cgtggtgactctttcatccttccttctccatttct 355


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)