BAC Information

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BAC

Clone NameMSMg01-060N03
Chromosome6 (Build37)
Map Location 79,029,739 - 79,030,287
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434050, Pap, Reg3d, Reg3a, Reg2, Reg1, Reg3g, LOC621716, Ppia-ps6_789.1, LOC384440
Downstream geneLOC621815, LOC100043392, Lrrtm4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-060N03.T7 (MSMg01no060_n03.b1)MSMg01-060N03.TJ (MSMg01no060_n03.g1)
ACCAG287175AG287176
length712723
length of high quality
(start - end)
581 (63 - 643)621 (77 - 697)
definitionCHROMAT_FILE: MSMg01no060_n03.b1 PHD_FILE: MSMg01no060_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:38 2005CHROMAT_FILE: MSMg01no060_n03.g1 PHD_FILE: MSMg01no060_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:03:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GCCAGATACCAGTGAAAAGTGGCATATTAAATTCTTTTCATGAGCTATTT
TAATGAGTTGAGAATTTTTTATTACAATTTATTTGCTTGAATACAGATAG
TGGTATTAAAAAAAGACAGAAAGAGGAGCTAGAAAGGAGACTGAGATGGT
GGGGAATTTTGCTGTGGAGAAATCAGGGCTCTGGAATTTCAATACCTAAA
ATCCATGTAGATGCTGGGTTGACATGGCAACCAACTTTCTGATTTCCCCC
AGAAGGGTAGAGCAAATATGGAATCCTGAGATCCCTAGAGCACAAGGCTG
TCTAGACTGCCAAATAATTGAGCTTTGGTTCACATGGGAGACTCTGCATC
AATATGTAATATACAGAGCTAATGATCAACAACTGAAGTTAGGATACAGC
CCTCTTATTTGCACATACATCTACATGCACACACACACACACACACACAC
ACACACACACACACACACACACACACACACACACACACATATATAAAAAG
ACATGGGATCATGTTTGTACCCATATAGACACACAATACAAAAGTAAGTG
AAGAAAANAATCTATTTTTTTGTGTTTTTTTAATGATGAAATTAGCTAGG
GGACCGAATAGGTTTTGGAAAGGGAATATATATAAAAATTTGGACTTGGA
TATCCCAAAAAA
NCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGGATGTGCTTCCTCTGTGCCT
GAACTATTTGCTCAATAAAATGTCTTGATAAAAGAGATAGGATGTCAGTC
TGGCCGTTCCTCAGAAAATTGGACATAGTACTACTGGAGGATCCCACAAT
ACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACA
CATGCTCCACTATGTTCATAGCAGTCTTATTTATAATAGCCTGAAGCTGG
AAAGAACCCAGATGCCCTTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGA
AATTCCTAGGCAAATGGATGGACTTGGAGGTCATCATCCTGAGTGAGGTA
ACCCAATCACAAAAGAACTCACACAATATGGACTCACTGATAAGTGGATA
TTAGCCCAGAAACTTAGAATGCTTAGATATAAGATACAATTTGCTAAACA
CATGAAACTCAAGAAGAACAAACACCAAAGTGTGGACACTTTGCCCCTTC
TTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACACAGTTT
GGAGCTGAGATGAAAAGATGGACCATCTAGAGACTGCCATATCAGGNGAT
TCATCCCATAATTAGCTTCCAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no060_n03.b1 MSMg01no060_n03.b1 CHROMAT_FILE:
MSMg01no060_n03.b1 PHD_FILE: MSMg01no060_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:03:38 2005
         (581 letters)



>mm_chr6_79029539_79030520
          Length = 982

 Score =  907 bits (469), Expect = 0.0
 Identities = 538/582 (92%), Gaps = 34/582 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaaaagtggcatattaaattcttttcatgagctattttaatgagttgagaattttttat 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 201 tgaaaagtgacatattaaattcttttcatgagctattttaatgagttgagaatttttcat 260

                                                                       
Query: 61  tacaatttatttgcttgaatacagatagtggtatt-aaaaaaagacagaaagaggagcta 119
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tacaatttatttgcttgaatacagatagtggtattaaaaaaaagacagaaagaggagcta 320

                                                                       
Query: 120 gaaaggagactgagatggtggggaattttgctgtggagaaatcagggctctggaatttca 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacaggagactgagatggtggggaattttgctgtggagaaatcagggctctggaatttca 380

                                                                       
Query: 180 atacctaaaatccatgtagatgctgggttgacatggcaaccaactttctgatttccccca 239
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 atacctaaaatccatgtagatgctgggttgacatggcaaccaactttctggtttccccca 440

                                                                       
Query: 240 gaagggtagagcaaatatggaatcctgagatccctagagcacaaggctgtctagactgcc 299
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 441 gaagggtagagcaaatatggaatcctgggatccctagagcacaaggctgtctagactgcc 500

                                                                       
Query: 300 aaataattgagctttggttcacatgggagactctgcatcaatatgtaatatacagagcta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 aaataattgagctttggttcacatgggagactctgcatcaatatgtaatatacagagtta 560

                                                                       
Query: 360 atgatcaacaactgaagttaggatacagccctcttatttgcacatacatctacatgcaca 419
           | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 561 acgatcaacaactgaagttaggatacagccctcttatgtgcacatacatctacatgcaca 620

                                                                       
Query: 420 cacacacacacacacacacacacacacacacacacacacacacacacacacacacacata 479
           ||||||||||||||||||||||||||||                                
Sbjct: 621 cacacacacacacacacacacacacaca-------------------------------- 648

                                                                       
Query: 480 tataaaaagacatgggatcatgtttgtacccatatagacacacaatacaaaagtaagtga 539
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 tataaacagacatgggatcatgtttgtacccatatagacacacaatacaaaagtaagtga 708

                                                     
Query: 540 agaaaanaatctatttttttgtgtttttttaatgatgaaatt 581
           |||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 709 agaaaaaaatctatttttttgtgtttttt-aatgatgaaatt 749


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 11
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 982
Length adjustment: 10
Effective length of query: 571
Effective length of database: 972
Effective search space:   555012
Effective search space used:   555012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)